RetrogeneDB ID: retro_tsyr_2076

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_8717:8733..9044(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HEBP1
• Ensembl ID: ENSTSYG00000014555
• Aliases: None
• Description: heme binding protein 1 [Source:HGNC Symbol;Acc:17176]

Sequence

>retro_tsyr_2076
GTGACAGATAAGCCTGTGGATGTAGCTCTACAGGAGGCAATGCCCAAAGTTTGAAGTACCTGGGGGGCACCAATGGCAAG
GGAATTGGGATGGGAATGACAGTCCCTATTTCCTTTGCTGTGTTCCCCAGTGAAGATGACTCCCTGCAGAAGAAACTAAA
AGCCCGGTTCAGGATTCCAAAGAAACTTCAAAGCAACCCGCCAGTTCCCAGTGAGGGAAGCGTCAAGATCGAGGATCAGG
AAAACATCACTGCCCATTCCACGCAGTTTCGTGGTTCTGCCAAAGAAGCAGACTATGTAGCTCAGCTGACT

Alignment

ORF - retro_tsyr_2076 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.24 %
• Parental protein coverage: 55.61 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VTDKPVDEALREAMPKV-VKYVGGTNDKGIGMGMTVPISFAVFPSEDGSLQKKLKVWFRIPNQFQSDPPV
          VTDKPVD.AL.EAMPKV..KY.GGTN.KGIGMGMTVPISFAVFPSED.SLQKKLK..FRIP...QS.PPV
Retrocopy VTDKPVDVALQEAMPKV<LKYLGGTNGKGIGMGMTVPISFAVFPSEDDSLQKKLKARFRIPKKLQSNPPV

Parental  PSDESIKIEERESITVYSTQFGGYAKEADYIAHAT
          PS..S.KIE..E.IT..STQF.G.AKEADY.A..T
Retrocopy PSEGSVKIEDQENITAHSTQFRGSAKEADYVAQLT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_2076 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010728	1 retrocopy	retro_amel_1466,
Canis familiaris	ENSCAFG00000013209	1 retrocopy	retro_cfam_1082,
Callithrix jacchus	ENSCJAG00000021628	1 retrocopy	retro_cjac_2023,
Mustela putorius furo	ENSMPUG00000011702	1 retrocopy	retro_mputfur_498,
Otolemur garnettii	ENSOGAG00000033976	1 retrocopy	retro_ogar_756,
Tarsius syrichta	ENSTSYG00000014555	1 retrocopy	retro_tsyr_2076 ,