RetrogeneDB ID: retro_ogar_821

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873528.1:13831708..13831992(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016759
• Aliases: None
• Description: None

Sequence

>retro_ogar_821
AAATATATTTCGTACAGGAACAATGAAGGCCTGATTGACCGGAACTCTCTAAAGAGGATGTTGAAGAAGCTTGACACCCC
AGAGACCCACTTGGAAGTTAAGAAGATGATCTCAGAGGGGACAGATGGGGTCAGCACACTATTTCCTATGGACACTTGGT
AAGGATGATGCTGGGGAAATGGTCCGCAGTACCTAAGCTAGTCGTGATGTTTGAAGGAAAAGTCAACAACAGCAGCCCCA
AGTCACTTGGTTCCCTTCCAGAGGGAAACACTGCTAGCCTTCCC

Alignment

ORF - retro_ogar_821 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.95 %
• Parental protein coverage: 57.83 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSD-TISYRDFVNMMLGKRSAVLKLV
          KY.....NNEG.ID..SLKRM..KL..P.THLE.KKMISE.T.GVS..TISY...V.MMLGK.SAV.KLV
Retrocopy KYISYR-NNEGLIDRNSLKRMLKKLDTPETHLEVKKMISEGTDGVST<TISYGHLVRMMLGKWSAVPKLV

Parental  MMFEGKANESSPKPVGPPPERDIASLP
          .MFEGK.N.SSPK..G..PE...ASLP
Retrocopy VMFEGKVNNSSPKSLGSLPEGNTASLP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_821 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000012167	2 retrocopies	retro_mdom_1769, retro_mdom_749,
Otolemur garnettii	ENSOGAG00000016759	2 retrocopies	retro_ogar_821 , retro_ogar_93,
Tursiops truncatus	ENSTTRG00000003925	1 retrocopy	retro_ttru_959,