RetrogeneDB ID: retro_ogar_93

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873532.1:21357796..21358249(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000027184
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016759
• Aliases: None
• Description: None

Sequence

>retro_ogar_93
ATGTCGGTTGCGCTCAACAACAGGTTCCAAGGAGGAAAGGCGTTTGGCTTGCTCAAAGCCCGGCAGGAGAGGAGACTGGC
CGAGATCAACCAAGAGTTTCTCTGTGAGCAGACGGGCGGGGATGAGGAGAACCTGCGGGAACGGCTCGCGGCCTTCAAAG
AGAAGTACATGGAGTTTGACCTGAACAATGAAGGCAAGATTGACCTGATGTCTTTAAAGAGAATGATGGAGAAGCTTGGC
GTCCCCAAGACCCACCTGGAGATGAAGAAAATGATCTCAGGGGTGACAGATGTGGTCAACGACACCATTTCCTACCGAGA
CTTTGTGAAGATGATGCTCGCGAAACGGCCGGCGGTCCTCAAGCTTGTCATGATGTTTGAAGGAAAAACCAAGGAGAGCA
GCCCCAGGTCAACCGGCCCCCCTCCGGAGAGAGACATTGCTAGCCTCCCCTGA

Alignment

ORF - retro_ogar_93 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.6 %
• Parental protein coverage: 75.3 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LALLFMEFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEV
          LA....EFLC.Q...DEENL.E.LAAFKEKYMEFDLNNEG.IDLMSLKRMMEKLGVPKTHLEMKKMIS.V
Retrocopy LAEINQEFLCEQTGGDEENLRERLAAFKEKYMEFDLNNEGKIDLMSLKRMMEKLGVPKTHLEMKKMISGV

Parental  TGGVSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIASLP
          T..V.DTISYRDFV.MML.KR.AVLKLVMMFEGK..ESSP...GPPPERDIASLP
Retrocopy TDVVNDTISYRDFVKMMLAKRPAVLKLVMMFEGKTKESSPRSTGPPPERDIASLP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_93 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000012167	2 retrocopies	retro_mdom_1769, retro_mdom_749,
Otolemur garnettii	ENSOGAG00000016759	2 retrocopies	retro_ogar_821, retro_ogar_93 ,
Tursiops truncatus	ENSTTRG00000003925	1 retrocopy	retro_ttru_959,