RetrogeneDB ID: retro_ogar_874

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873529.1:36328490..36328784(-)
• Located in intron of: ENSOGAG00000000809

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DCTPP1
• Ensembl ID: ENSOGAG00000011361
• Aliases: None
• Description: dCTP pyrophosphatase 1 [Source:HGNC Symbol;Acc:28777]

Sequence

>retro_ogar_874
CTGTCTATGGCTGATGGGGAGATGAATGGGGACATAGCGGGGAGAGGCCCTGCTCCTGTCAGCCGATTCAGCTTTAGCCC
AGAGCCCACGCTCAAGGACATCCGACACCTCCATGCCGAGTTTGCTGCTGAATGAGACTGGGACCAGTTCCACCAGCCTC
AGAACCTCCTCCTGGCCTTGGTGGGAGAAGTGGGGGAGCTGGCAGAACTCTTTCAGTGGAAGCCTGATAAGGAGCCTGGT
CCCCAGACATGGCCACCCAAGGAACGGGCAGCCCTTGACCAGGAACTTAGTGAT

Alignment

ORF - retro_ogar_874 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.71 %
• Parental protein coverage: 57.65 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LSMAGGEMSGDTGGKGPAPVGRFSFSPEPTLEDIRRLHAEFAAERDWDQFHQPRNLLLALVGEVGELAEL
          LSMA.GEM.GD..G.GPAPV.RFSFSPEPTL.DIR.LHAEFAAE.DWDQFHQP.NLLLALVGEVGELAEL
Retrocopy LSMADGEMNGDIAGRGPAPVSRFSFSPEPTLKDIRHLHAEFAAE*DWDQFHQPQNLLLALVGEVGELAEL

Parental  FQWKPDEEPGPQAWPPKERAALEEELSD
          FQWKPD.EPGPQ.WPPKERAAL..ELSD
Retrocopy FQWKPDKEPGPQTWPPKERAALDQELSD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_874 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000016594	1 retrocopy	retro_cfam_887,
Callithrix jacchus	ENSCJAG00000002621	2 retrocopies	retro_cjac_43, retro_cjac_676,
Myotis lucifugus	ENSMLUG00000013774	1 retrocopy	retro_mluc_1052,
Otolemur garnettii	ENSOGAG00000011361	1 retrocopy	retro_ogar_874 ,
Rattus norvegicus	ENSRNOG00000017850	2 retrocopies	retro_rnor_1173, retro_rnor_2626,
Sus scrofa	ENSSSCG00000007796	1 retrocopy	retro_sscr_676,