RetrogeneDB ID: retro_ogar_880

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873530.1:4313217..4313466(+)
• Located in intron of: ENSOGAG00000013716

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCDC167
• Ensembl ID: ENSOGAG00000000921
• Aliases: None
• Description: coiled-coil domain containing 167 [Source:HGNC Symbol;Acc:21239]

Sequence

>retro_ogar_880
GAGATCAGTGGGCTAGAGGAGAAACTGTCTCAGTGTCAGAGAGCCCTGGAGGCTGTGAACTCCAGGCTCCACAGGGCCGA
GCTGAGCCCAGAGGCCAGGAGGTCTCTAGAGAAGGAGAAAAACAGCCTGATGAGCAAAGCCTCCAACTGTGAGAAGGAGC
TAAAGTTGCTTCGGCAAGAGAATCGAAAGAACATGCTGCTCTCTGTAGCCATCTTCATCCTCCTGACCCTTGTCTATGCC
TACTGCACT

Alignment

ORF - retro_ogar_880 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.77 %
• Parental protein coverage: 86.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QIDGLEEKLSQCQRDLEAVNSRLHRAELSPEARKSLEKEKNSLMSKASNYEKELKLLRQENRKNMLLSVA
          .I.GLEEKLSQCQR.LEAVNSRLHRAELSPEAR.SLEKEKNSLMSKASN.EKELKLLRQENRKNMLLSVA
Retrocopy EISGLEEKLSQCQRALEAVNSRLHRAELSPEARRSLEKEKNSLMSKASNCEKELKLLRQENRKNMLLSVA

Parental  IFILLTLVYAYWT
          IFILLTLVYAY.T
Retrocopy IFILLTLVYAYCT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_880 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000012069	2 retrocopies	retro_btau_30, retro_btau_517,
Canis familiaris	ENSCAFG00000030835	1 retrocopy	retro_cfam_1854,
Callithrix jacchus	ENSCJAG00000005622	2 retrocopies	retro_cjac_3293, retro_cjac_960,
Felis catus	ENSFCAG00000006745	1 retrocopy	retro_fcat_1558,
Mus musculus	ENSMUSG00000024018	1 retrocopy	retro_mmus_3487,
Otolemur garnettii	ENSOGAG00000000921	1 retrocopy	retro_ogar_880 ,
Pongo abelii	ENSPPYG00000016563	1 retrocopy	retro_pabe_2092,