RetrogeneDB ID: retro_ogar_91

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873526.1:24199940..24200813(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000027793
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000005575
• Aliases: None
• Description: None

Sequence

>retro_ogar_91
ATGAGCGGCAGAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTTCCACATAACCAAAGAAGAGAAGGGAG
GGATGTTAATTCATCTTCACCCGTGATGCTGGCCTTCAAATCATTTCAGCAGGAGCTTGATGCAAGGCATGACAAATATG
AGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGGCTATTTTTCTACTCCATAGGATTACGAGTGCT
CCTGATATGGAAGAAATACTGAATGAATCAGAAATTAAACTGGATGGTGTCCGACAGAAGATACTGCAGGTAGCACAGGA
GCCGTCAGGAGAAGACATGCACCAATTCCATAGAGCCATTACTACAGGACTGCAAGAATATGTGGAAGCTGTCTCTTTTC
AGTACTTCATCAAAACACGATCATTAATCAGTATGGATGAAATTAATAAGCAATTGATATTTACAACTGAAGACAACGGG
AAAGAAAATAAGATTCCCTCTTCTGATGCACAGGATAAACAGTTTGGCACTTGGAGCCTGAAAATCACACCTGTGGATTA
CCTTCTAGGAGTGGCTGATTTAACTGGAGAATTGATGCGGATGTGTATTAACAGTGTGGGGAATGGGGACATTGACACCC
CCTTTGAAGTGAGCCAGTTTTTACGGCAGGTTTATGATGGATTTTCATTCATTGGCAACACTGGACCATATGAGGTTTCT
AAAAAGCTGTATACCTTGAAACAGAGTCTGGCCAAAGTGGAGAATGCTTGTTATGCTTTGAAAGTCAGAGGTTCAGAAAT
TCCAAAGCATATGCTGGCAGATGTGTTTTCAGTAAAAACAGAAATGATTGATCAAGAAGAGGGCATTTCTTAG

Alignment

ORF - retro_ogar_91 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.97 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSGREEGSGGFRKRKHDNFPHNQRREGRGVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKR
          MSGRE.GSGGFRKRKHDNFPHNQRREGR.VNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKR
Retrocopy MSGRE-GSGGFRKRKHDNFPHNQRREGRDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKR

Parental  AIFLLHRITSAPDMEEILNESEIKLDGVRQKILQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQYFIKT
          AIFLLHRITSAPDMEEILNESEIKLDGVRQKILQVAQE.SGEDMHQFHRAITTGLQEYVEAVSFQYFIKT
Retrocopy AIFLLHRITSAPDMEEILNESEIKLDGVRQKILQVAQEPSGEDMHQFHRAITTGLQEYVEAVSFQYFIKT

Parental  RSLISMDEINKQLIFTTEDNGKENKIPSSDAQDKQFGTWSLKITPVDYLLGVADLTGELMRMCINSVGNG
          RSLISMDEINKQLIFTTEDNGKENKIPSSDAQDKQFGTWSLKITPVDYLLGVADLTGELMRMCINSVGNG
Retrocopy RSLISMDEINKQLIFTTEDNGKENKIPSSDAQDKQFGTWSLKITPVDYLLGVADLTGELMRMCINSVGNG

Parental  DIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVK
          DIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVK
Retrocopy DIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVK

Parental  TEMIDQEEGIS
          TEMIDQEEGIS
Retrocopy TEMIDQEEGIS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_91 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000002637	1 retrocopy	retro_amel_1655,
Dasypus novemcinctus	ENSDNOG00000006963	1 retrocopy	retro_dnov_1829,
Felis catus	ENSFCAG00000028088	1 retrocopy	retro_fcat_1789,
Myotis lucifugus	ENSMLUG00000015591	1 retrocopy	retro_mluc_1131,
Mus musculus	ENSMUSG00000056820	1 retrocopy	retro_mmus_393,
Otolemur garnettii	ENSOGAG00000005575	1 retrocopy	retro_ogar_91 ,
Ictidomys tridecemlineatus	ENSSTOG00000024989	1 retrocopy	retro_itri_259,