>retro_oind_105
ATCGCCCCCTCGATCCTGTCCGCCGACTTCGCCCGGCTGGGTGAGGAAGTCCGCGCCATCGACGCCGCCGGCGCCGACTG
GATCCATATCGATGTGATGGACGGGCATTTCGTGCCCAACATCACCATCGGCCCGGCGGTGGTGAAGGCGCTGCGCCCGC
ATACGACCAAGCCGTTCGACGTGCATCTGATGATTTCCCCCATCGACGCCTATCTCGATGCGTTCGCCGCGGCGGGCGCG
GACACGATCACCGTCCATCCCGAGGCGGGCCCGCACATCCACCGCACGATCCAGCACATCAAGGGGCTGGGCAAGCGCGC
CGGCGTCGTCCTGAACCCCGCCACGCCCGCCAAGATGCTGGATTATCTGATCGACATGGTCGACCTGGTCCTCGTCATGA
GCGTGAACCCCGGCTTCGGTGGCCAGAGCTTCATCGAGAGCCAGCTCAAGAAGATTGCGGCGATCCGCAAGATGATCGAG
CATTCGGGCCGCGCCATCGATCTGGAGGTCGACGGCGGC
ORF - retro_oind_105 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
61.14 % |
Parental protein coverage: |
63.87 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | VSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQ |
| ..PSILSA.F..LGE.V.A...AG.DWIH.DVMDG.FVPNITIGP.VV.ALRP.T..P.DVHLMI..... |
Retrocopy | IAPSILSADFARLGEEVRAIDAAGADWIHIDVMDGHFVPNITIGPAVVKALRPHTTKPFDVHLMISPIDA |
|
Parental | RVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPG |
| ....F..AGAD...VH.E.....H.HRT...IK.LG..AGVVLNPATP....DY..D.VDLVL.MSVNPG |
Retrocopy | YLDAFAAAGADTITVHPEAGP--HIHRTIQHIKGLGKRAGVVLNPATPAKMLDYLIDMVDLVLVMSVNPG |
|
Parental | FGGQSFIESQVKKIAELRRLCAEKGVNPWIEVDGG |
| FGGQSFIESQ.KKIA..R......G.....EVDGG |
Retrocopy | FGGQSFIESQLKKIAAIRKMIEHSGRAIDLEVDGG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza sativa indica was not studied using RNA-Seq expression data.
Oryza sativa indica was not studied using ChIP-Seq data.
Oryza sativa indica was not studied using EST data.
Oryza sativa indica was not studied using FANTOM5 data.
retro_oind_105 was not experimentally validated.
Retrocopy orthology:
Oryza sativa indica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.