Common name: Rice subsp. indica
Latin name: Oryza sativa indica
Genome assembly: ASM465v1
All retrocopies: 80
Parental genes: 78

Summary: Number of retrocopies :
Conserved ORF: 78 ORF 2 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_oind_1 76.12 % 99.16 % ORF
2. retro_oind_2 50.27 % 78.30 % ORF
3. retro_oind_3 53.16 % 50.53 % ORF
4. retro_oind_4 79.83 % 86.94 % ORF
5. retro_oind_5 61.19 % 54.46 % ORF
6. retro_oind_6 67.69 % 82.49 % ORF
7. retro_oind_7 71.37 % 97.10 % ORF
8. retro_oind_8 52.81 % 92.61 % ORF
9. retro_oind_9 55.50 % 60.06 % ORF
10. retro_oind_10 61.73 % 87.64 % ORF
11. retro_oind_11 55.47 % 54.94 % ORF
12. retro_oind_12 52.21 % 89.29 % ORF
13. retro_oind_13 52.10 % 69.76 % ORF
14. retro_oind_14 69.46 % 94.16 % ORF
15. retro_oind_15 59.32 % 59.30 % ORF
16. retro_oind_16 72.29 % 89.74 % ORF
17. retro_oind_17 73.19 % 95.53 % ORF
18. retro_oind_18 65.03 % 70.93 % ORF
19. retro_oind_19 73.41 % 97.30 % ORF
20. retro_oind_20 53.59 % 50.43 % ORF
21. retro_oind_21 59.66 % 69.71 % ORF
22. retro_oind_22 55.51 % 88.19 % ORF
23. retro_oind_23 54.17 % 76.62 % ORF
24. retro_oind_24 76.24 % 91.39 % ORF
25. retro_oind_25 74.07 % 80.70 % ORF
26. retro_oind_26 90.79 % 99.35 % ORF
27. retro_oind_27 56.54 % 62.96 % ORF
28. retro_oind_28 69.11 % 98.75 % ORF
29. retro_oind_29 97.47 % 94.43 % ORF
30. retro_oind_30 71.49 % 75.54 % ORF
31. retro_oind_31 69.81 % 73.01 % ORF
32. retro_oind_32 80.68 % 99.49 % ORF
33. retro_oind_33 59.79 % 55.99 % ORF
34. retro_oind_34 62.54 % 80.05 % ORF
35. retro_oind_35 52.08 % 58.54 % ORF
36. retro_oind_36 59.19 % 78.25 % ORF
37. retro_oind_37 68.55 % 80.19 % ORF
38. retro_oind_38 62.91 % 91.90 % ORF
39. retro_oind_39 70.92 % 90.18 % ORF
40. retro_oind_40 56.33 % 73.87 % ORF
41. retro_oind_41 52.82 % 78.13 % ORF
42. retro_oind_42 76.92 % 72.92 % ORF
43. retro_oind_43 66.42 % 92.91 % ORF
44. retro_oind_44 50.24 % 86.05 % ORF
45. retro_oind_45 63.59 % 77.78 % ORF
46. retro_oind_46 51.20 % 78.80 % ORF
47. retro_oind_47 52.29 % 76.92 % ORF
48. retro_oind_48 74.17 % 100.00 % ORF
49. retro_oind_49 55.90 % 78.27 % ORF
50. retro_oind_50 71.55 % 89.58 % ORF
51. retro_oind_51 52.71 % 93.19 % ORF
52. retro_oind_52 100.00 % 100.00 % ORF
53. retro_oind_53 52.49 % 54.26 % ORF
54. retro_oind_54 64.04 % 83.37 % ORF
55. retro_oind_55 52.88 % 78.35 % ORF
56. retro_oind_56 56.67 % 88.03 % ORF
57. retro_oind_57 98.05 % 100.00 % ORF
58. retro_oind_58 58.89 % 58.33 % ORF
59. retro_oind_59 56.04 % 73.85 % ORF
60. retro_oind_60 59.29 % 89.87 % ORF
61. retro_oind_61 64.03 % 59.15 % ORF
62. retro_oind_62 50.17 % 71.05 % ORF
63. retro_oind_63 56.21 % 97.77 % ORF
64. retro_oind_64 70.28 % 98.92 % ORF
65. retro_oind_65 69.22 % 59.08 % ORF
66. retro_oind_66 66.01 % 97.39 % ORF
67. retro_oind_67 73.98 % 68.53 % ORF
68. retro_oind_68 56.16 % 77.66 % ORF
69. retro_oind_74 67.43 % 96.76 % ORF
70. retro_oind_77 60.00 % 52.67 % ORF
71. retro_oind_81 54.23 % 94.55 % ORF
72. retro_oind_87 73.40 % 72.68 % ORF
73. retro_oind_100 55.50 % 81.85 % ORF
74. retro_oind_101 53.98 % 55.89 % ORF
75. retro_oind_102 50.25 % 60.00 % ORF
76. retro_oind_103 54.91 % 88.66 % ORF
77. retro_oind_104 71.76 % 80.30 % ORF
78. retro_oind_105 61.14 % 63.87 % ORF
79. retro_oind_106 63.01 % 97.23 % ORF
80. retro_oind_107 53.30 % 73.01 % ORF
# Ensembl ID Symbol Description
1. BGIOSGA017602 ATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:B8AWF8]
2. BGIOSGA006950
3. BGIOSGA016143 Probable aldo-keto reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:A2XRZ0]
4. BGIOSGA027162
5. BGIOSGA026004
6. BGIOSGA004458
7. BGIOSGA025301
8. BGIOSGA001283
9. BGIOSGA013463 ACT1 Actin-1 [Source:UniProtKB/Swiss-Prot;Acc:A2XLF2]
10. BGIOSGA014643
11. BGIOSGA013168
12. BGIOSGA005797
13. BGIOSGA003218
14. BGIOSGA037101
15. BGIOSGA033375
16. BGIOSGA003192
17. BGIOSGA009362
18. BGIOSGA009088
19. BGIOSGA017864 EXPA4 Expansin-A4 [Source:UniProtKB/Swiss-Prot;Acc:A2Y5R6]
20. BGIOSGA017090
21. BGIOSGA005240
22. BGIOSGA037413
23. BGIOSGA016543
24. BGIOSGA027748
25. BGIOSGA021489 Asparagine synthetase [Source:UniProtKB/TrEMBL;Acc:B8B0C7]
26. BGIOSGA017925
27. BGIOSGA035012 Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:A2ZCP0]
28. BGIOSGA024972
29. BGIOSGA017675
30. BGIOSGA009019
31. BGIOSGA007827
32. BGIOSGA003078
33. BGIOSGA001352
34. BGIOSGA013198
35. BGIOSGA014839 Malate synthase [Source:UniProtKB/TrEMBL;Acc:A2XUV1]
36. BGIOSGA021077
37. BGIOSGA023742 Xylose isomerase [Source:UniProtKB/TrEMBL;Acc:B8B5T6]
38. BGIOSGA004342
39. BGIOSGA015276
40. BGIOSGA018388
41. BGIOSGA033426
42. BGIOSGA026520
43. BGIOSGA003951 SWEET6A Bidirectional sugar transporter SWEET6a [Source:UniProtKB/Swiss-Prot;Acc:A2WSD8]
44. BGIOSGA008655
45. BGIOSGA018946
46. BGIOSGA005956
47. BGIOSGA012917
48. BGIOSGA035760
49. BGIOSGA023324
50. BGIOSGA004881
51. BGIOSGA020885 Ribose-phosphate pyrophosphokinase [Source:UniProtKB/TrEMBL;Acc:A2YF17]
52. BGIOSGA009703
53. BGIOSGA014399
54. BGIOSGA009239
55. BGIOSGA000088
56. BGIOSGA006938
57. BGIOSGA004451
58. BGIOSGA004194
59. BGIOSGA029783
60. BGIOSGA007878
61. BGIOSGA003712
62. BGIOSGA008091
63. BGIOSGA016968
64. BGIOSGA036000 Pectinesterase [Source:UniProtKB/TrEMBL;Acc:B8BMI9]
65. BGIOSGA013825
66. BGIOSGA036765
67. BGIOSGA009904
68. BGIOSGA008337
69. BGIOSGA014531
70. BGIOSGA028079
71. BGIOSGA015973 ETFB Electron transfer flavoprotein subunit beta, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:A2XQV4]
72. BGIOSGA031928
73. BGIOSGA018931
74. BGIOSGA012189
75. BGIOSGA007628
76. BGIOSGA004758
77. BGIOSGA011944 Ribulose-phosphate 3-epimerase [Source:UniProtKB/TrEMBL;Acc:B8APA6]
78. BGIOSGA005278 Metallothionein type 2; Metallothionein-like protein type 2 [Source:UniProtKB/TrEMBL;Acc:A2WZM5]
Retrogenes FASTA BED
TSV (download all or selected columns from MySQL table)
Parental genes FASTA BED
TSV (download all or selected columns from MySQL table)