>retro_oind_44
ATGCGTCCGGCGATCGCCGCTTCCGACAGCATCACCCGCACGGTGAACGAGATCCTCGACAACGTGAAGGCCAACGGCGA
TCGGGCGTTGCGCGACTACAGCGCCCGTTTCGACAAGGCGGAAGTCTCGACGCTGCGCGTCAGCGCCGAGCAGATCGCCG
CCGCCGCCGCGCGGTTGGGCGACGACATCAAACAGGCGATGGCGGTGGCCGTCGCCAACGTGGAAACCTTCCACAACGCG
CAGCGACTGCCGCCGGTGGACGTCGAAACGCAACCGGGCGTGCGCTGCCAGCAGGTGACCCGCCCAATCGACTCGGTGGG
CCTGTATATTCCCGGCGGATCGGCGCCGCTGTTCTCCACCGTGCTGATGCTGGCGACGCCGGCGCGCATCGCCGGCTGCC
GCCGGGTAGTGCTGTGCTCGCCGCCGCCGATCGCCGATGAGATCCTGTATGCGGCGCAGCTGTGCGGCGTGCAGGAAGTG
TTTCAGGTCGGGGGCGCGCAGGCGATCGCCGCCCTGGCGTTCGGCACCGAAAGCGTGCCGCGCGTAGCGAAGATCTTCGG
GCCGGGCAACGCCTTCGTGACCGAAGCCAAGCGGCAGGTCAGCCAGCGCCTTGACGGCGCGGCCATCGACATGCCGGCCG
GTCCTTCGGAAGTGCTGGTGATCGCCGACGCCGGCGCCACCCCGGCATTTGTCGCTTCCGATCTGCTGTCGCAGGCCGAG
CACGGCCCGGATTCGCAGGTGATCCTGCTGACGCCGGACGCGGCGATGGCGCAGGCGGTGGCCGAAGCGGTGGAAAGCCA
GCTGGCCGAGCTGCCGCGTGCTGAGACCGCCCGTCAGGCGCTGGCGAGCAGCCGCCTGATCGTGGCGCGCGATCTGCCGG
AGTGCGTGGCCATCAGCAACCGTTACGGCCCGGAGCACCTGATCATTCAGACCCGCAATGCGCGCGATCTGGTGGACGGC
ATCACCAGCGCCGGTTCGGTGTTCCTCGGCGACTGGTCGCCGGAGTCCGCCGGCGATTACGCCTCCGGCACCAACCACGT
GCTGCCGACCTACGGCTACACCGCTACCTGCTCAAGCCTTGGGCTGGCCGATTTCCAAAAACGCATGACGGTGCAGGAGC
TGACGCCGCAGGGCTTCAGCAACCTGGCCGCCACCATCGAGACGCTGGCTGCCGCCGAGCAGCTGATCGCCCACAAGAAC
GCCGTGACCCTGCGCGTCGCCGCCCTGAAGGAGCAAGCATGA
ORF - retro_oind_44 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
50.24 % |
Parental protein coverage: |
86.05 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RPRIDFS-SIFGTVNPIVEDVRMRGDAAVKDYTVKFDKVALDDVVVRVSDLPDV--ELDPAVKEAFDVAY |
| RP.I..S.SI..TVN.I...V...GD.A..DY...FDK.......V...........L....K.A..VA. |
Retrocopy | RPAIAASDSITRTVNEILDNVKANGDRALRDYSARFDKAEVSTLRVSAEQIAAAAARLGDDIKQAMAVAV |
|
Parental | DNIYAFHVSQKLPEKTVENMKGVRCKRITRCIGSVGLYVPGGTAVLPSTALMLAVPAQIAGCKTVVLATP |
| .N...FH..Q.LP...VE...GVRC...TR.I.SVGLY.PGG.A.L.ST.LMLA.PA.IAGC..VVL..P |
Retrocopy | ANVETFHNAQRLPPVDVETQPGVRCQQVTRPIDSVGLYIPGGSAPLFSTVLMLATPARIAGCRRVVLCSP |
|
Parental | PSRDGSICKEVLYCAKKAGVTHVLKAGGAQAISAMAWGTVSCPKVEKIFGPGNQYVTAAKMILQNSEAMV |
| P.....I..E.LY.A...GV..V...GGAQAI.A.A.GT.S.P.V.KIFGPGN..VT.AK.......... |
Retrocopy | PP----IADEILYAAQLCGVQEVFQVGGAQAIAALAFGTESVPRVAKIFGPGNAFVTEAKRQVSQRLDGA |
|
Parental | SIDMPAGPSEVLVIADKYANPVHVAADLLSQAEHGPDSQVVLVVAGDGVDLGAIEAEVSKQCSALPRGEF |
| .IDMPAGPSEVLVIAD..A.P..VA.DLLSQAEHGPDSQV.L....D.....A....V..Q...LPR.E. |
Retrocopy | AIDMPAGPSEVLVIADAGATPAFVASDLLSQAEHGPDSQVILLTP-DAAMAQAVAEAVESQLAELPRAET |
|
Parental | ASKALGHSFTVFAKDMVEAISFSNMYAPEHLIINVKDAEQWEDLVENAGSVFLGQWTPESVGDYASGTNH |
| A..AL..S....A.D..E....SN.Y.PEHLII....A....D....AGSVFLG.W.PES.GDYASGTNH |
Retrocopy | ARQALASSRLIVARDLPECVAISNRYGPEHLIIQTRNARDLVDGITSAGSVFLGDWSPESAGDYASGTNH |
|
Parental | VLPTYGYARMYSGVSLNSFLKYITVQSLSEEGLRSLGPHVAKMAEVEGLEAHRRAVTLRL |
| VLPTYGY....S...L..F.K..TVQ.L...G...L.......A..E.L.AH..AVTLR. |
Retrocopy | VLPTYGYTATCSSLGLADFQKRMTVQELTPQGFSNLAATIETLAAAEQLIAHKNAVTLRV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza sativa indica was not studied using RNA-Seq expression data.
Oryza sativa indica was not studied using ChIP-Seq data.
Oryza sativa indica was not studied using EST data.
Oryza sativa indica was not studied using FANTOM5 data.
retro_oind_44 was not experimentally validated.
Retrocopy orthology:
Oryza sativa indica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.