RetrogeneDB ID: | retro_olat_1 | ||
Retrocopylocation | Organism: | Medaka (Oryzias latipes) | |
| Coordinates: | 11:2686792..2687113(-) | ||
| Located in intron of: | ENSORLG00000001159 | ||
Retrocopyinformation | Ensembl ID: | ENSORLG00000001178 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSORLG00000001192 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_olat_1
AATGTTGTTGTGACTCAGCCAGCAGCTAAATCAGTGCAGCTCGGTCAAAAGGTCACTATTGACTGTAAGGCCAGTCAACA
AGTAGCTCACTATTCAGGTTCACAATACTATCTTGCCTGGTACCATCAGAAATCTGGAGAAGCTCCTAAAGCTCTGATCT
ACAGAACATCAGACAGATTTTCAGGAATCTCCTCCAGATTCAGTGGAAGTGGATCAGGAAATGGAATTGACTTCACTCTG
ACCATCAGTGGAGTCCAGGCTGAAGATTCAGGAGTTTATTACTGTCAGAGTTATCACAATATCAACAGTCAGGATGTGTT
C
AATGTTGTTGTGACTCAGCCAGCAGCTAAATCAGTGCAGCTCGGTCAAAAGGTCACTATTGACTGTAAGGCCAGTCAACA
AGTAGCTCACTATTCAGGTTCACAATACTATCTTGCCTGGTACCATCAGAAATCTGGAGAAGCTCCTAAAGCTCTGATCT
ACAGAACATCAGACAGATTTTCAGGAATCTCCTCCAGATTCAGTGGAAGTGGATCAGGAAATGGAATTGACTTCACTCTG
ACCATCAGTGGAGTCCAGGCTGAAGATTCAGGAGTTTATTACTGTCAGAGTTATCACAATATCAACAGTCAGGATGTGTT
C
ORF - retro_olat_1 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.88 % |
| Parental protein coverage: | 74.6 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | NVVVTQPAAKSVQLNQEVTIDCKASQKMFYESNFCNYIHWYLQKSGEAPKLLIYYATTRQSGVSDRFRGS |
| NVVVTQPAAKSVQL.Q.VTIDCKASQ.....S....Y..WY.QKSGEAPK.LIY....R.SG.S.RF.GS | |
| Retrocopy | NVVVTQPAAKSVQLGQKVTIDCKASQQVAHYSGSQYYLAWYHQKSGEAPKALIYRTSDRFSGISSRFSGS |
| Parental | GSGS--DYTLTISGVQAEDSGVYYCQ |
| GSG...D.TLTISGVQAEDSGVYYCQ | |
| Retrocopy | GSGNGIDFTLTISGVQAEDSGVYYCQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Oryzias latipes was not studied using RNA-Seq expression data.
Oryzias latipes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_olat_1 retrocopy.
Oryzias latipes was not studied using FANTOM5 data.
retro_olat_1 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_olat_1 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Oryzias latipes | ENSORLG00000001192 | 1 retrocopy |
retro_olat_1 ,
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