RetrogeneDB ID: | retro_olat_15 | ||
Retrocopy location | Organism: | Medaka (Oryzias latipes) | |
| Coordinates: | 5:26944600..26945578(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSORLG00000013930 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | mafba | ||
| Ensembl ID: | ENSORLG00000009479 | ||
| Aliases: | None | ||
| Description: | v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) [Source:ZFIN;Acc:ZDB-GENE-980526-515] |
Retrocopy-Parental alignment summary:
>retro_olat_15
GCCAGCTGCAGTTTCATGAGCTCTGAGGCGCTTTCACATCTAAAAATCCCCATGGATTTCGTGGGCGACTTTGACTTGAT
GAAATTCGGCGTGAAGAAGGAGACGATGCAGAGTCTGGAACGCGCATTCGTCGGGCCGTGCAGTCAGCTCCAAAGGCCAG
ACTCCGTCTCCTCCACCCCTGGCACCACTCCGTGCAACTCGGTGCCCTCCTCTCCAAACATCAACCCGCACGAGCAGAGA
AACACCCCCGGGGGCGACCACTTCTGGATGCACAACAACGGCGGATACCCTCATCAGATGTACCCCCAAGCTTTTGGTCT
GACCCCCGAGGACGCAATGGAGGCCCTCATTGACGCGACGCAGCAGGGGCACCCCACTGCGCCCCACATCCACCACCCTC
AGCCCTTCCAGGGTGACTACGAGGGCTACGCTCACCTGAACGAGCCTGTCCACCACTACGCGGGCCTCCCCGGTCACCCC
GACATGCAGGGCGTCCCGAGCAGCCACTGCCAGGACACATATCTCAAGGATGAAATCGGGTGCGAGTCCCCGCAGTCGCC
GGAGGCCCAGCAGGTCGTGGGTGCGCACCACCCTCTCCAGCAACCGCACCGGCGATCCACCAGCGAGATGCACTTCTCAG
ACGACCAGCTGGTGTCCATGTCCGTCAGAGAGCTGAATCGGCTGCTGAGGGGCCTGAGCAAGGACGAGGTGATGCGTCTG
AAGCAGAAGCGGCGGACCTTGAAAAACAGAGGTTACGCACAGTCCTGCCGCTACAAGCGGGTGCAGCAGAAACACATCCT
GGAGCACGAAAAGACCAGCCTGGTGTCACAGGTCGAGCAGCTGAAACACGAACTCAGCAGGCTGGTCCGAGAGAGGGACG
CATACAAACTCAAATGTGAGAAACTGTCCGGGGCGAACTGCTACCACGAAACCGGCTCCACCAGTGACAACCCGTCTTCT
CCTGAGTATTTAATATGA
ORF - retro_olat_15 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 56.38 % |
| Parental protein coverage: | 73.7 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | YWMPNSG-YHQQIDPQTLNLTPEDAVEALIGATAHGHPPPPHVQQQLQQQGAFEGYRGPYAGSMQHHTEE |
| .WM.N.G.Y..Q..PQ...LTPEDA.EALI.AT..GHP..PH.......QG..EGY.........HH... | |
| Retrocopy | FWMHNNGGYPHQMYPQAFGLTPEDAMEALIDATQQGHPTAPHIHHPQPFQGDYEGYA--HLNEPVHHYAG |
| Parental | LSGHPGGHNHPHGQHHHHHSQDPES-PSPVSPEAHQTLSQSAAHHSSGSGLSVEDRFSDEQLVSMSVREL |
| L.GHP.....P..........D.....SP.SPEA.Q.................E..FSD.QLVSMSVREL | |
| Retrocopy | LPGHPDMQGVPSSHCQDTYLKDEIGCESPQSPEAQQVVGAHHPLQQPHRRSTSEMHFSDDQLVSMSVREL |
| Parental | NRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRFKRVQQKHVLENEKTQLMNQVEQLKAEISRLARERDAY |
| NR.LRG..KDEV.RLKQKRRTLKNRGYAQSCR.KRVQQKH.LE.EKT.L..QVEQLK.E.SRL.RERDAY | |
| Retrocopy | NRLLRGLSKDEVMRLKQKRRTLKNRGYAQSCRYKRVQQKHILEHEKTSLVSQVEQLKHELSRLVRERDAY |
| Parental | KLKCEKLTGSGATNGFREAGSTSDNPSSPEFFM |
| KLKCEKL.G....N...E.GSTSDNPSSPE... | |
| Retrocopy | KLKCEKLSGA---NCYHETGSTSDNPSSPEYLI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Oryzias latipes was not studied using RNA-Seq expression data.
Oryzias latipes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_olat_15 retrocopy.
Oryzias latipes was not studied using FANTOM5 data.
retro_olat_15 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_olat_15 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Oryzias latipes | ENSORLG00000009479 | 1 retrocopy |
retro_olat_15 ,
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