RetrogeneDB ID: | retro_olat_35 | ||
Retrocopylocation | Organism: | Medaka (Oryzias latipes) | |
Coordinates: | 23:9574253..9575249(-) | ||
Located in intron of: | ENSORLG00000012195 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSORLG00000014457 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | KPRRELSQDIRNKIIDKHRKGKGYKTISKQLEVPVTTVAHTIQKFKTHRTVVNLPGRRERAELRTR-KKE |
K.RRELSQDIRNKII.KH.KGKGYKTISKQLEVPV.TVAH.IQK.KTH.TV.NLPGR............. | |
Retrocopy | K*RRELSQDIRNKIIGKHYKGKGYKTISKQLEVPVSTVAHIIQKLKTHKTVDNLPGRGRKRKIDDKLRRQ |
Parental | LVMSVEKY---AFSEHQREYTHQGTSVSNHTIRGCLSQSGLHGRRPRRTPLLKGNHK-TRLEFAKMHVDK |
.V..V.K...........E...QGTSVS..TIR.CLSQSG.HGR.PRRTPLLKGNHK..RLEFAKMHVD. | |
Retrocopy | IVGTVSKEPRTTYKDIKGELLDQGTSVSDRTIRRCLSQSGFHGR*PRRTPLLKGNHKKARLEFAKMHVDN |
Parental | PQSFWENVLWTDETKLELFGKAHQLYVRRLKNEAYNEKSTVPTVKHGGGSVLFWGCF-AASGTECLEVVQ |
PQSFWENVLW..ETKLELFG.AHQLYVRRLKNEAYNEK.TVP.VKHGGGSVLFWGC...A.G.E...VVQ | |
Retrocopy | PQSFWENVLWSYETKLELFGNAHQLYVRRLKNEAYNEKNTVPAVKHGGGSVLFWGCI<MAQGVE---VVQ |
Parental | GQMKSPDYQGILGRNVLPSVRKLGLSRRSWVFQQDNDPKH-AKNPQEWLREKHWTILKWPSMSPDLNPIE |
G.MKS.DY.GIL.RNVLPSVRKL.LSRRSWVFQQ.NDPKH.A.N.Q.WLREK.WTILKWPSMSPDLNPIE | |
Retrocopy | GKMKSQDY*GILDRNVLPSVRKLSLSRRSWVFQQGNDPKHTARNLQ*WLREKRWTILKWPSMSPDLNPIE |
Parental | HLWKK-RRHP-SNLRQLEQFAHEEWARIPVDRCRRLIDKYRNSLIAVIASKGCATKY |
HLWK.....P.SNLRQLEQFAHEE.A.IPVDRCRRLIDKY.N.LIAVIASKGCATKY | |
Retrocopy | HLWKELKKTP>SNLRQLEQFAHEELAKIPVDRCRRLIDKYKNHLIAVIASKGCATKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryzias latipes | ENSORLG00000010891 | 1 retrocopy | |
Oryzias latipes | ENSORLG00000013353 | 2 retrocopies | |
Oryzias latipes | ENSORLG00000014457 | 2 retrocopies |
retro_olat_35 , retro_olat_43,
|
Oryzias latipes | ENSORLG00000018922 | 1 retrocopy | |
Oryzias latipes | ENSORLG00000019689 | 1 retrocopy | |
Oryzias latipes | ENSORLG00000019879 | 1 retrocopy | |
Oryzias latipes | ENSORLG00000020726 | 1 retrocopy |