RetrogeneDB ID: | retro_olat_48 | ||
Retrocopylocation | Organism: | Medaka (Oryzias latipes) | |
| Coordinates: | scaffold1457:30187..30476(-) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSORLG00000010286 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_olat_48
GGGATCGTCAATATCGAGCGTGGTCATGACCTCGGTTGTAAGACGTCGTTTATAAGCAAATTTCAGTGGGTTTTCGGTTT
GCCGAAAAAGGTTTTTAAGTAGCGCAGCGCCTCCAACGGAAGCCTCTGCCACAGCGGCGAGATGACTGCATGCATGGCTG
CAGCGGCTGCTCTGCTCGAACGAAAACAACTTTCTCGGGAGGTTCCCCAAATCTTTTCATCGGTCTAATACATTTTGTGT
AAAATTATTTTGCAATTATTTCGGTTTTTTTATTTTGAATACATGTCTC
GGGATCGTCAATATCGAGCGTGGTCATGACCTCGGTTGTAAGACGTCGTTTATAAGCAAATTTCAGTGGGTTTTCGGTTT
GCCGAAAAAGGTTTTTAAGTAGCGCAGCGCCTCCAACGGAAGCCTCTGCCACAGCGGCGAGATGACTGCATGCATGGCTG
CAGCGGCTGCTCTGCTCGAACGAAAACAACTTTCTCGGGAGGTTCCCCAAATCTTTTCATCGGTCTAATACATTTTGTGT
AAAATTATTTTGCAATTATTTCGGTTTTTTTATTTTGAATACATGTCTC
ORF - retro_olat_48 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 57.84 % |
| Parental protein coverage: | 92.45 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | GIVVIERGHDLGCKTSF-KKTNFSGFSVRRKSF-LSSAALPMEASAT-RRGYDCMHGCSS-RLCSNENYF |
| GIV.IERGHDLGCKTSF..K....GF....K.F.LSSAA.P.EASAT.RR..DCMHGCS...LCSNEN.F | |
| Retrocopy | GIVNIERGHDLGCKTSF<YKQISVGFRFAEKGF<LSSAAPPTEASAT>RRD-DCMHGCSG<LLCSNENNF |
| Parental | LGRFPKSFQKHGSVILIVFALFLYFYTFYTII |
| LGRFPKSF..........F.....F....T.. | |
| Retrocopy | LGRFPKSFHRSNTFCVKLFCNYFGFFILNTCL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Oryzias latipes was not studied using RNA-Seq expression data.
Oryzias latipes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_olat_48 retrocopy.
Oryzias latipes was not studied using FANTOM5 data.
retro_olat_48 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_olat_48 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Oryzias latipes | ENSORLG00000010286 | 1 retrocopy |
retro_olat_48 ,
|