RetrogeneDB ID: | retro_olat_5 | ||
Retrocopylocation | Organism: | Medaka (Oryzias latipes) | |
| Coordinates: | 12:20299606..20299975(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSORLG00000011994 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | RNF212 (2 of 2) | ||
| Ensembl ID: | ENSORLG00000000298 | ||
| Aliases: | None | ||
| Description: | ring finger protein 212 [Source:HGNC Symbol;Acc:27729] |
Retrocopy-Parental alignment summary:
>retro_olat_5
ATGTCGTTTTGGGTCTACTGTAACTCCTGCTTTCTCTCCGCCGCTGCTGACCGTCAGCTGGCCGTCACCACCTGTGGTCA
TGTCATCTGCAGTGTCTGCTACCAGAAAGGCAAACAAAAAAACTGTTTAATATGCAGCAGCCAGTGCCAAATATCCCCAC
TTTCTGACAAAAGCAGCTCTGAAGTGAAGACTTTGTTCTCAGACATCAACGTCGTGACGACTAAGCACTTGACGGAAATC
AGCAAAGTGATATCGTTCCAGTCAAGACACCAGAGAAAGCTGCTGACTCACTACAAGAAAAGAAATGAAAAACTGGAAGA
AACATTCGTGAAAATGAAGCAAGAAATGCAGAACATGGCAAAGAAGCTG
ATGTCGTTTTGGGTCTACTGTAACTCCTGCTTTCTCTCCGCCGCTGCTGACCGTCAGCTGGCCGTCACCACCTGTGGTCA
TGTCATCTGCAGTGTCTGCTACCAGAAAGGCAAACAAAAAAACTGTTTAATATGCAGCAGCCAGTGCCAAATATCCCCAC
TTTCTGACAAAAGCAGCTCTGAAGTGAAGACTTTGTTCTCAGACATCAACGTCGTGACGACTAAGCACTTGACGGAAATC
AGCAAAGTGATATCGTTCCAGTCAAGACACCAGAGAAAGCTGCTGACTCACTACAAGAAAAGAAATGAAAAACTGGAAGA
AACATTCGTGAAAATGAAGCAAGAAATGCAGAACATGGCAAAGAAGCTG
ORF - retro_olat_5 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 99.17 % |
| Parental protein coverage: | 100. % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MSFWVYCNSCFLSAAADRQLAVTTCGHVICSVCYQKGKQKNCLICSSQCQISPLSDKSSSEVKTLFSDIN |
| MSFWVYCNSCFLSAAADRQLAVTTCGHVICSVCYQKGKQKNCLICSSQCQISPLSDKSSSEVKTLFSDIN | |
| Retrocopy | MSFWVYCNSCFLSAAADRQLAVTTCGHVICSVCYQKGKQKNCLICSSQCQISPLSDKSSSEVKTLFSDIN |
| Parental | VVTTKHLTEISKVISFQSRHQRKLLTHYKKRNEKLEETFVKMKQEMQKMAK |
| VVTTKHLTEISKVISFQSRHQRKLLTHYKKRNEKLEETFVKMKQEMQ.MAK | |
| Retrocopy | VVTTKHLTEISKVISFQSRHQRKLLTHYKKRNEKLEETFVKMKQEMQNMAK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Oryzias latipes was not studied using RNA-Seq expression data.
Oryzias latipes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_olat_5 retrocopy.
Oryzias latipes was not studied using FANTOM5 data.
retro_olat_5 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_olat_5 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Oryzias latipes | ENSORLG00000000298 | 1 retrocopy |
retro_olat_5 ,
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