RetrogeneDB ID: retro_oluc_4

Retrocopy location

• Organism: Ostreococcus lucimarinus
• Coordinates: 8:667520..668045(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: OSTLU_42852
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: OSTLU_34076
• Aliases: None
• Description: None

Sequence

>retro_oluc_4
ATGAGCTTGGACCGACTCGAGGTGAAGCACCGAGATAAGTTCAAGTGCTATTTTGACATCACCATCGGCGGCGAAGCCGC
GGGGCGAGTCACTATGGAGATTCGCGGCGACGTCACGCCCAAGTGCGGGGAGAACTTCAGGCAGTTGTGCACCGGTGAGG
CTGGATTCGGATACAAGGGTTCTCCGTTTCATCGCGTGATCCCGGGTTTCATGTGCCAAGGTGGGGATTTCACCAACCGC
AACGGCACGGGCGGCAAGTCCATCTTCGGCAACAAGTTTGAAGACGAAAACTTCACCTTGAAGCACACGGGACCGGGGAT
TTTGTCCATGGCGAACGCCGGACCGAACACGAACGGCTCGCAGTTTTTCTTGTGCACGGCTGAAACCGCTTGGTTGGACG
GTAAGCACACCGTCTTCGGCTCCGTCATCGACGGCATGGACGTCGTTAAGAAGGTTGAAGCCGTTGGCTCGCAATCCGGC
GCCACGTCCGCGGAAGTTCTCATCGCCGATTGCGGCGAGCTTTAG

Alignment

ORF - retro_oluc_4 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.5 %
• Parental protein coverage: 96.95 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  CYFDIEIGGQPAGRIEMTVRADVVPKTAENFRALCTGEKGFGYEGSSFHRVIPGFMCQGGDFTNHNGTGG
          CYFDI.IGG..AGR..M..R.DV.PK..ENFR.LCTGE.GFGY.GS.FHRVIPGFMCQGGDFTN.NGTGG
Retrocopy CYFDITIGGEAAGRVTMEIRGDVTPKCGENFRQLCTGEAGFGYKGSPFHRVIPGFMCQGGDFTNRNGTGG

Parental  KSIYGNKFEDENFVLKHTGPGILSMANAGPNTNGSQFFLCTADTAWLDGKHTVFGAVSKGMDVVKAIEAV
          KSI.GNKFEDENF.LKHTGPGILSMANAGPNTNGSQFFLCTA.TAWLDGKHTVFG.V..GMDVVK..EAV
Retrocopy KSIFGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHTVFGSVIDGMDVVKKVEAV

Parental  GSQSGACSKKVTIAKSGVL
          GSQSGA.S..V.IA..G.L
Retrocopy GSQSGATSAEVLIADCGEL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Ostreococcus lucimarinus was not studied using RNA-Seq expression data.

ChIP-Seq

Ostreococcus lucimarinus was not studied using ChIP-Seq data.

EST

Ostreococcus lucimarinus was not studied using EST data.

TSS

Ostreococcus lucimarinus was not studied using FANTOM5 data.

Lab

retro_oluc_4 was not experimentally validated.

Homology

Retrocopy orthology:

Ostreococcus lucimarinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ostreococcus lucimarinus	OSTLU_34076	2 retrocopies	retro_oluc_4 , retro_oluc_5,