RetrogeneDB ID: retro_oluc_5

Retrocopy location

• Organism: Ostreococcus lucimarinus
• Coordinates: 10:591005..591650(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: OSTLU_37985
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: OSTLU_34076
• Aliases: None
• Description: None

Sequence

>retro_oluc_5
ATGACGCGAGTCGAACGCGCGCGAAACGGACGACGAACGACGACGACGACGACGATCAAGATGATGCTCGTCGTCGCGCT
GGGCGCGCTGGCGTGCGCGTTCGTCGCGACGCCGGTGCTCGCGGAAAAGCGCGCGCCGAAAGTCACCGATAAGGTGTTCT
TCGACGTGACGATCGACGGTGAACCCGCGGGGCGAATCGTCATGGGGCTGTACGGGAAGACGGTGCCGAAGACGGCGGAA
AACTTCAAGCAACTCGCGACGGGGGAGAACGGATTCGGGTACAAAGGCTCGGGATTCCATCGAGTGATCAAGAACTTTAT
GATTCAGGGTGGTGATTTCACCAATCACGACGGCACCGGGGGGAAGTCGATCTACGGCGCGCGATTCCCGGATGAAAACT
TCAAGCTCAAGCACGAGGGGCCGGGGACGCTGTCCATGGCCAACGCCGGGCCGGACACGAACGGGTCGCAGTTTTTCATC
TGCACCGTCAAGACGAGCTGGCTGGACGGCCGACACACCGTCTTCGGGCGCGTGCTCGAGGGCATGGACGTCGTGACGGC
GATCGAAAACCTCGAGGGGACGCCGCCGCAAAAGCCGGTGCTGATTGCCGACTCGGGCGTCTTACCGATGGACGCCGAAC
TTTAA

Alignment

ORF - retro_oluc_5 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.72 %
• Parental protein coverage: 96.34 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YFDIEIGGQPAGRIEMTVRADVVPKTAENFRALCTGEKGFGYEGSSFHRVIPGFMCQGGDFTNHNGTGGK
          .FD..I.G.PAGRI.M......VPKTAENF..L.TGE.GFGY.GS.FHRVI..FM.QGGDFTNH.GTGGK
Retrocopy FFDVTIDGEPAGRIVMGLYGKTVPKTAENFKQLATGENGFGYKGSGFHRVIKNFMIQGGDFTNHDGTGGK

Parental  SIYGNKFEDENFVLKHTGPGILSMANAGPNTNGSQFFLCTADTAWLDGKHTVFGAVSKGMDVVKAIEAVG
          SIYG..F.DENF.LKH.GPG.LSMANAGP.TNGSQFF.CT..T.WLDG.HTVFG.V..GMDVV.AIE...
Retrocopy SIYGARFPDENFKLKHEGPGTLSMANAGPDTNGSQFFICTVKTSWLDGRHTVFGRVLEGMDVVTAIENL-

Parental  SQSGACSKKVTIAKSGVL
          .......K.V.IA.SGVL
Retrocopy -EGTPPQKPVLIADSGVL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Ostreococcus lucimarinus was not studied using RNA-Seq expression data.

ChIP-Seq

Ostreococcus lucimarinus was not studied using ChIP-Seq data.

EST

Ostreococcus lucimarinus was not studied using EST data.

TSS

Ostreococcus lucimarinus was not studied using FANTOM5 data.

Lab

retro_oluc_5 was not experimentally validated.

Homology

Retrocopy orthology:

Ostreococcus lucimarinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ostreococcus lucimarinus	OSTLU_34076	2 retrocopies	retro_oluc_4, retro_oluc_5 ,