RetrogeneDB ID: retro_pabe_161

Retrocopy location

• Organism: Orangutan (Pongo abelii)
• Coordinates: 9:29023388..29028878(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSPPYG00000019145
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: TAF1
• Ensembl ID: ENSPPYG00000020453
• Aliases: None
• Description: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa [Source:HGNC Symbol;Acc:11535]

Sequence

>retro_pabe_161
ATGGGACCTGGCTGCGATTTGCTGCTGAGGGCAGCAGCTACCGTCACTGCCGTCACTGCCGTCACTGCCGCCATCATGTC
AGACACGGACAGCGAGGAAGATTCAGCTGGAGGCGGCCCATTTTCTTTAGCGGGTATCCTTTTCGGCAACATCAATGGAG
CGGGGCAGCTGGAGGGGGAAAACGTCTTAGATGATGAGTGTAAGAAGCACTTGGCAGGCTTGGGGGCTTTGGGGCTGGGC
AGCCTGATCACTGAACTCACGGCAAATGAAGAATTGACCGGGACTGGCGGTGCCTTGGTAAATGATGAAGGGTGGATTAG
GAGTACAGAAGATGCTGTGGACTATTCAGACATCAACGAGGTGGCAGAAGATGAAAGCCGAAGACACCAGCAGACGATGG
GGAGCTTGCAGCCCCTTCGCCACTCGGATTATGATGAAGACGACTATGATGCTGATTGTGAAGGCATTGATTGCAAGTTG
ATGCCTCCTCCACCTCCACCCCTGGGACTAATGAAGAAGGATAAGGACCAAGATGCTATTACCTGTGTGTCTGAAAATGG
AGAAGGCATCATCTTGCCCTCCATCATTGCCCCTTCTTTTTTGGCCTCAGAGAAGGTGGATTTCAGTAGTTACTCTGATT
CAGAATCTGAGATGGGACCTCAGGAAGCAACACAGGCAGAATCTGAGGATGGAAAGCTGACCCTTCCATTGGCTGGGGTT
ATGCAGCATGATGCCACCAAGCTGTTGCCAAGTGTCACAGAACTTTTTCCAGAATTTCGACCTGGAAAGGTGTTACGCTT
CCTACATCTTTTTGGACCAGGGAAGAATGTCCCATCTGTTTGGCGGAGTGCTCGGAGAAAGAGGAAGAAGCATCGTGAGC
TGATACAGGAAGAGCAGATCCAGGAGGTGGAATGCTCGGTAGAATCAGAAGTCAGCCAGAAGTCTTTGTGGAACTATGAC
TACGCTCCACCACCACCTCCAGAGCAGTGCCTCTCTGATGATGAAATCACGATGATGGTTCCTGTGGAGTCCAAATTTTC
CCAATCAACTGGAGATGTAGATAAAGTGACAGATACCAAACCAAGAGTGGCTGAGTGGCGTTATGGGCCTGCCCGACTGT
GGTATGATATGTTGGGTGTCTCCGAAGATGGCAGTGGGTTTGACTATGGCTTCAAACTGAGAAAGACACAACATGAACCT
GTGATAAAATCTAGAATGACGGAGGAATTTAGAAAACTTGAGGAAAGCAATGGCACTGATCTTCTGGCTGACGAAAACTT
CCTGATGGTGACACAGCTGCATTGGGAGGATTCTATCATCTGGGATGGGGAGGATGTCAAACACAAAGGGACAAAACCTC
AGCATGCAAGCCTGGCAGGCTGGCTTCCTTCTAGCATGACTAGGAATGCAATGGCTTACAATGTTCAGCAAGGTTTTGCA
GCCACTCTGGATGATGACAAACCTTGGTACTCCATTTTTCCGATTGACAATGAGGATTTGGTGTATGGACGCTGGGAGGA
CAATATCATTTGGGATGCTCAGGCCATGCCCTGGCTGTTGGAACCTCCTGTTTTGGCACTTGATCCCAATGATGAGAACC
TCATTTTGGAAATTCCTGATGAGAAGGAAGAGGCCACCTCTAACTCCCCCTCCAAGGAGAGTAAGAAGGAATCATCTCTG
AAGAAGAGTCGAATTCTCTTGGGCAAAACAGGTGTCATCAGGGAGGAACCACAGCAGAACATGTCTCAGCCAGAAGTGAA
AGATCCATGGAATCTCTCCAATGATGAGTATTATTTCCCCAAGCAACAGGGTCTTTGGGGCACCTTTGGAGGGAATATTA
TCCAGCATTCAATTCCTGCTATGGAATTATGGCAGCCCTTCTTTCCCACCCACATGGGGCCCATCAAAATCCGGCAGTTC
CATCGCCCACCTCTGAAAAAGTACTCATTTGGTGCACTGTCTCAGCCAGGTCCCCATTCAGTCCAACCTTTGCTAAAGCA
CATCAGAAAAAAGGCCAAGATGAGAGAACAAGAGAGGCAAGCCTCAGGTGGTGGAGAGTTGTTTTTTATGCGCACACCTC
AGGATCTCACAGGCAAAGATGGAGATCTTATTCTTGCAGAATATAGTGAGGAAAATGGACCCTTAATGATGCAGGTTGGC
ATGGCAACCAAGATAAAGAACTATTATAAACGGAAACCTGGAAAAGATCCTGGAGCACCAGATTGTAAATATGGGGAAAC
TGTTTACTGCCATACATCTCCTTTCTTGGGCTCTCTCCATCCTGGCCAATTACTGCAGGCACTTGAGAACAACCTTTTTC
GTGCTCCAATGTATCTTCATAAGATGCCAGAAACTGATTTTCTGATCATTCGGACAAGACAGGGTTACTATATTCGGGAA
TTAGTGGATATTTTTGTGGTTGGCCAGCAGTGTCCCTTGTTTGAAGTTCCTGGGCCTAACTCCAGAAGGGCCAATATGCA
TATTCGAGACTTTCTAGAGGTTTTTATTTACCGCCTTTTCTGGAAAAGTAAAGATCGGCCACGGAGGATACGAATGGAAG
ATATAAAAAAAGCCTTTCCTTCCCATTCAGAAAGCAGCATCCGGAAGAGGCTAAAGCTCTGCGCTGACTTCAAACGCACA
GGGATGGATTCAAACTGGTGGGTGCTTAAGTCTGATTTTCGTTTACCAACGGAAGAAGAGATCAGAGCTAAGGTGTCACC
AGAGCAGTGCTGTGCTTATTATAGCATGATAGCTGCAAAGCAACGACTGAAGGATGCTGGCTATGGTGAGAAATCCTTTT
TTGCCCCAGAAGAAGATGAGGAAGATTTCCAGATGAAGATTGATGATGAAGTTCACACTGCTCCTTGGAACACCACAAGG
GCCTTCATTGCTGCCATGAAGGGCAAGTGTCTCCTAGAAGTGACTGGGGTGGCAGATCCCACAGGGTGTGGTGAAGGATT
CTCCTATGTGAAGATTCCAAATAAACCAACAAAGCAGAAGGATGATAAAGAGCTGCAGGCAGTGAAGACAGTGACAGGAA
CAGATGCAGACCTTCGTCGCCTTTCCCTGAAAAATGCCAAGCAACTTCTACGTAAATTTGGTGTGCCCGAGGAAGAGATT
AAAAAGTTGTCCCGCTGGGAAGTGATTGATGTGGTGCGCACAATGTCAACAGAACAGGCTCGTTCTGGAGAGGGGCCCAT
GAGTAAATTTGCCCGTGGATCAAGGTTTTCTGTGGCTGAGCATCAAGAGCGTTACAAAGAGGAATGTCAGCGTATCTTTG
ACCTACAGAACAAGGTTCTGTCATCAACTGAGGTCTTATCAACTGACACAGACAGCAGCTCAGCTGAAGATAGTGACTTT
GAAGAAATGGGAAAGAACATTGAGAACATGTTGCAGAACAAGAAAACCAGCTCTCAGCTGTCACGTGAATGGGAGGAGCA
GGAGCGGAAGGAACTACAGCGAATGCTACTGGCAGCAGGCTCAGCAGCATCAGGAAACAATCACCGAGATGATGACACAG
CTTCCATGACTAGCCTTAACTCTTCTGCCACTGGATACTGTCTCAAGATTTATCGCACATTTCGAGATGAAGAGGGGAAA
GAGTATGTTCGCTGTGAGACAGTCCGAAAACCAGCTGTCATTGATGCCTATGTGCGCATACGGACTACAAAAGATGAGAC
ATTCATTCAGAAATTTGCCCTTTTTGATGAAAAACATCGGGAAGAGATGCGGAAAGAACGGCGGAGGATTCAAGAGCAAC
TGAGGCGGCTTAAGCGGAACCAGGAAAAGGAGAAGCTTAAGGGTCCTCCTGAGAAGAAGCCCAAGAAAATGAAGGAGCGT
CCTGACCTAAAACTGAAATGTGGGGCATGTGGTGCCATTGGACACATGAGGACTAACAAATTCTGCCCCCTCTATTATCA
AACAAATGTGCCACCTTCCAAACCTGTTGCCATGACAGAAGAGCAGGAGGAGGAGTTGGAAAAGACAGTCATTCATAATG
ATAATGAAGAACTTATCAAGGTTGAAGGGACCAAAATTGTCTTGGGGAAACAGCTAATTGAGAATGTGGATGAGGTTCGC
AGAAAATCTCTGGTTCTCAAGTTTCCTAAACAGCAGCTTCCTCCAAAGAAGAAACGGCGAGTTGGAACCACTGTTCCTTG
TGACTATTTGAATACACCTCATAAGTCCATCCACCGACGCCGCACAGACCCTATGGTGATGCTGTCATCCATCTTGGAGT
CTATCATCAATGACATGAGAGATCTTCCAAATACATACCCTTTCCACACTCCAGTCAATGCAAAGGTTGTAAAGGACTAC
TACAAAATCATCACTCGGCCAATGGACCTACAAACACTCCGTGAAAATGTGCGTAAATGCCTCTACCCATCTCGGGAAGA
GTTCAGAGAGCATCTGGAGCTAATTGTGAAAAACAGTGCAACCTACAATGGGCCAAAACATTCATTGACTCAGATTTCTC
AATCCATGCTGGATCTCTGTGATGAAAAACTCAAAGAGAAAGAAGACAAATTAGCTCGCTTAGAGAAAGCTATCAACCCC
TTGCTGGATGATGATGACCAAGTGGCATTTTCTTTCATTCTGGACAACATTGTCACCCAGAAAATGATGGCAGTTCCAGA
TTCTTGGCCATTTCATCACCCAGTTAATAAGAAGTTTGTTCCAGATTATTACAAAGTGATTGTCAATCCAGTGGATTTAG
AGACCATACGTAAGAACATCTCCAAGCACAAGTATCAGAGTCGGGAGAGTTTTCTAGATGATGTAAACCTTATTCTGGCC
AACAGTGTTAAGTATAATGGACCTGAGAGTCAGTATACTAAAACTGCTCAGGAGATTGTGAACGTCTGTTACCAGACAAT
CACTGAGTATGATGAGCATTTGACTCAACTTGAGAAGGATATTTGTACAGCTAAAGAAGCAGCTTTGGAGGAAGCAGAAT
TAGAAAGCCTGGACCCAATGACCCCAGGGCCCTACACATCTCAGCCTCCTGATATGTATGAAACCAACACATCCCTCAGT
ACGTCTCGAGATGCCTCTGTATTTCAAGATGAGAGCAATATGTCTGTCTTGGATATTCCCACTGCCACTCCAGAAAAGCA
GATGTGCCAGGGCCGAGGTAGGCTGGGTGAGGAAGACTCTGATGTGGATATTGAAGAGTATGATGATGAGGAGGAGGATG
GGAAACCTAAGCCTCCAGCCCCAGAAGGGGGAGATGGTGATCTTGCAGATGAAGAGGAAGGAACTGTACAACAACCTGAA
GCCAGTGTCCTGTATGAGGATTTGCTTATGTCTGAAGGAGAAGAAGATGAGGAAGATGCTGGGAGTGATGAAGAAGGAGA
CAATCCTTTCTCTGCTATCCAGCTGAGTGAAAGTGGAAGTGACTCTGATGTGGGATATGGTGGAATAAGACCCAAACAAC
CCTGCATGCTTCAGCATGCTTCAGGAGAACACAAGGATGGGTATGGAAAA

Alignment

ORF - retro_pabe_161 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.39 %
• Parental protein coverage: 90.2 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YDEDDYDADCEDIDCKLMPPPPPPPGPMKKDKDQDAITSVSENGEGIILPSIIAPSSLASEKVDFSSSSD
          YDEDDYDADCE.IDCKLMPPPPPP.G.MKKDKDQDAIT.VSENGEGIILPSIIAPS.LASEKVDFSS.SD
Retrocopy YDEDDYDADCEGIDCKLMPPPPPPLGLMKKDKDQDAITCVSENGEGIILPSIIAPSFLASEKVDFSSYSD

Parental  SESEMGPQEATQAESEDGKLTLPLAGIMQHDATKLLPSVTELFPEFRPGKVLRFLRLFGPGKNVPSVWRS
          SESEMGPQEATQAESEDGKLTLPLAG.MQHDATKLLPSVTELFPEFRPGKVLRFL.LFGPGKNVPSVWRS
Retrocopy SESEMGPQEATQAESEDGKLTLPLAGVMQHDATKLLPSVTELFPEFRPGKVLRFLHLFGPGKNVPSVWRS

Parental  ARRKRKKKHRELIQEEQIQEVECSVELEVSQKSLWNYDYAPPPPPEQCLSDDEITMMAPVESKFSQSTGD
          ARRKRKK.HRELIQEEQIQEVECSVE.EVSQKSLWNYDYAPPPPPEQCLSDDEITMM.PVESKFSQSTGD
Retrocopy ARRKRKK-HRELIQEEQIQEVECSVESEVSQKSLWNYDYAPPPPPEQCLSDDEITMMVPVESKFSQSTGD

Parental  IDKVTDTKPRVAEWRYGPARLWYDMLGVPEDGSGFDYGFKLRKTEHEPVIKSRMIEEFRKLEENNGTDLL
          .DKVTDTKPRVAEWRYGPARLWYDMLGV.EDGSGFDYGFKLRKT.HEPVIKSRM.EEFRKLEE.NGTDLL
Retrocopy VDKVTDTKPRVAEWRYGPARLWYDMLGVSEDGSGFDYGFKLRKTQHEPVIKSRMTEEFRKLEESNGTDLL

Parental  ADENFLMVTQLHWEDDIIWDGEDVKHKGTKPQRASLAGWLPSSMTRNAMAYNVQQGFAATLDDDKPWYSI
          ADENFLMVTQLHWED.IIWDGEDVKHKGTKPQ.ASLAGWLPSSMTRNAMAYNVQQGFAATLDDDKPWYSI
Retrocopy ADENFLMVTQLHWEDSIIWDGEDVKHKGTKPQHASLAGWLPSSMTRNAMAYNVQQGFAATLDDDKPWYSI

Parental  FPIDNEDLVYGRWEDNIIWDAQAMPRLLEPPVLTLDPNDENLILEIPDEKEEATSNSPSKESKKESSLKK
          FPIDNEDLVYGRWEDNIIWDAQAMP.LLEPPVL.LDPNDENLILEIPDEKEEATSNSPSKESKKESSLKK
Retrocopy FPIDNEDLVYGRWEDNIIWDAQAMPWLLEPPVLALDPNDENLILEIPDEKEEATSNSPSKESKKESSLKK

Parental  SRILLGKTGVIKEEPQQNMSQPEVKDPWNLSNDEYYYPKQQGLRGTFGGNIIQHSIPAVELRQPFFPTHM
          SRILLGKTGVI.EEPQQNMSQPEVKDPWNLSNDEYY.PKQQGL.GTFGGNIIQHSIPA.EL.QPFFPTHM
Retrocopy SRILLGKTGVIREEPQQNMSQPEVKDPWNLSNDEYYFPKQQGLWGTFGGNIIQHSIPAMELWQPFFPTHM

Parental  GPIKLRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQASGGGEMFFMRTPQDLTGKDGD
          GPIK.RQFHRPPLKKYSFGALSQPGPHSVQPLLKHI.KKAKMREQERQASGGGE.FFMRTPQDLTGKDGD
Retrocopy GPIKIRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIRKKAKMREQERQASGGGELFFMRTPQDLTGKDGD

Parental  LILAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQAFENNL
          LILAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQA.ENNL
Retrocopy LILAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQALENNL

Parental  FRAPIYLHKMPETDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWK
          FRAP.YLHKMPETDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNS.RAN.HIRDFL.VFIYRLFWK
Retrocopy FRAPMYLHKMPETDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSRRANMHIRDFLEVFIYRLFWK

Parental  SKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAMVSPEQCCA
          SKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRA.VSPEQCCA
Retrocopy SKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAKVSPEQCCA

Parental  YYSMIAAEQRLKDAGYGEKSFFAPEEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVTGVADPT
          YYSMIAA.QRLKDAGYGEKSFFAPEE..EEDFQMKIDDEV.TAPWNTTRAFIAAMKGKCLLEVTGVADPT
Retrocopy YYSMIAAKQRLKDAGYGEKSFFAPEED-EEDFQMKIDDEVHTAPWNTTRAFIAAMKGKCLLEVTGVADPT

Parental  GCGEGFSYVKIPNKPTQQKDDKEPQPVKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVID
          GCGEGFSYVKIPNKPT.QKDDKE.Q.V.KTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVID
Retrocopy GCGEGFSYVKIPNKPTKQKDDKELQAV-KTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVID

Parental  VVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLSSTEVLSTDTDSSSAEDSDF
          VVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLSSTEVLSTDTDSSSAEDSDF
Retrocopy VVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLSSTEVLSTDTDSSSAEDSDF

Parental  EEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLLAAGSAASGNNHRDDDTASVTSLNSSATGRCLKI
          EEMGKNIENMLQNKKTSSQLSRE.EEQERKELQRMLLAAGSAASGNNHRDDDTAS.TSLNSSATG.CLKI
Retrocopy EEMGKNIENMLQNKKTSSQLSREWEEQERKELQRMLLAAGSAASGNNHRDDDTASMTSLNSSATGYCLKI

Parental  YRTFRDEEGKEYVRCETVRKPAVIDAYVRIRTTKDEEFIRKFALFDEQHREEMRKERRRIQEQLRRLKRN
          YRTFRDEEGKEYVRCETVRKPAVIDAYVRIRTTKDE.FI.KFALFDE.HREEMRKERRRIQEQLRRLKRN
Retrocopy YRTFRDEEGKEYVRCETVRKPAVIDAYVRIRTTKDETFIQKFALFDEKHREEMRKERRRIQEQLRRLKRN

Parental  QEKEKLKGPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTV
          QEKEKLKGPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTN.PPS.PVAMTEEQEEELEKTV
Retrocopy QEKEKLKGPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTNVPPSKPVAMTEEQEEELEKTV

Parental  IHNDNEELIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNRPHKSIHRR
          IHNDNEELIKVEGTKIVLGKQLIE..DEVRRKSLVLKFPKQQLPPKKKRRVGTTV.CDYLN.PHKSIHRR
Retrocopy IHNDNEELIKVEGTKIVLGKQLIENVDEVRRKSLVLKFPKQQLPPKKKRRVGTTVPCDYLNTPHKSIHRR

Parental  RTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFRE
          RTDPMV.LSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRK.LYPSREEFRE
Retrocopy RTDPMVMLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKCLYPSREEFRE

Parental  HLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQ
          HLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQ
Retrocopy HLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQ

Parental  KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES
          KMMAVPDSWPFHHPVNKKFVPDYYKVIVNP.DLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES
Retrocopy KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES

Parental  QYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYTPQPPDLYDTNTSLS
          QYTKTAQEIVNVCYQT.TEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYT.QPPD.Y.TNTSLS
Retrocopy QYTKTAQEIVNVCYQTITEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYTSQPPDMYETNTSLS

Parental  MSRDASVFQDESNMSVLDIPTATPEKQVTQEGEDGDGDLADEE
          .SRDASVFQDESNMSVLDIPTATPEKQ..Q....G.G.L..E.
Retrocopy TSRDASVFQDESNMSVLDIPTATPEKQMCQ----GRGRLGEED

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	1.88 RPM	28.47 RPM
SRP007412_cerebellum	2.68 RPM	37.82 RPM
SRP007412_heart	1.96 RPM	15.74 RPM
SRP007412_kidney	1.89 RPM	23.34 RPM
SRP007412_liver	1.56 RPM	20.04 RPM

ChIP-Seq

Pongo abelii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_pabe_161 retrocopy.

TSS

Pongo abelii was not studied using FANTOM5 data.

Lab

retro_pabe_161 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_pabe_161 has 2 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_66
Macaca mulatta	retro_mmul_1149

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000147133	1 retrocopy	retro_hsap_66,
Myotis lucifugus	ENSMLUG00000009092	1 retrocopy	retro_mluc_793,
Macaca mulatta	ENSMMUG00000005663	1 retrocopy	retro_mmul_1149,
Pongo abelii	ENSPPYG00000020453	1 retrocopy	retro_pabe_161 ,
Sarcophilus harrisii	ENSSHAG00000005804	1 retrocopy	retro_shar_291,