RetrogeneDB ID: | retro_pcap_66 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_3704:309511..309974(+) | ||
Located in intron of: | ENSPCAG00000000744 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO1 | ||
Ensembl ID: | ENSPCAG00000001084 | ||
Aliases: | None | ||
Description: | slowmo homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:24639] |
Percent Identity: | 66.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MKTWSSEHVFSYPWDTVIKAAMRKYPNPMNPSVVGVDVLERTVDCRGRLHSYRLLSTEWGLPTIVKAILG |
MK.W.SEHVF...W.TV..AAM.KYPNPMNPSVVGVDV..R..D..G.LHS.RLLSTEWGLP.IVK.I.G | |
Retrocopy | MKIWTSEHVFDHLWETVTTAAMQKYPNPMNPSVVGVDVPHRHGDPSGKLHSHRLLSTEWGLPSIVKSIIG |
Parental | TRRTLTYITEHSVVDPVEKKMELCSTNITLTNLVSVDERLVYTPHLENSEMT-VLTQEAIITVK-GISLG |
...T.TY..EHSVVDPV...MEL.STNI..TN.VSVDERL...PH....E.T..LTQ.A.ITVK.G.SL. | |
Retrocopy | AAITKTYMQEHSVVDPVGRTMELKSTNISFTNMVSVDERLMHKPHPQGPEKT<ILTQQALITVK<GVSLS |
Parental | SYLESLMANTISSNAKK |
SYLE..MA..ISSNA.K | |
Retrocopy | SYLEGHMASAISSNASK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012800 | 2 retrocopies | |
Mus musculus | ENSMUSG00000024530 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000022237 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001084 | 1 retrocopy |
retro_pcap_66 ,
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