RetrogeneDB ID: | retro_ocun_723 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:126681069..126681407(+) | ||
Located in intron of: | ENSOCUG00000025555 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO1 | ||
Ensembl ID: | ENSOCUG00000022237 | ||
Aliases: | None | ||
Description: | slowmo homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:24639] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 65.12 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MKIWSSEHV-FGHPWDTVIKAAMRKYPNPM-NPCVVGVDVLERGVDGRGRLHSLRLLSTEWGLPSLVRAI |
MK.WSSEHV.FGHP.D.V.K..MR.Y.NP..NP..VG.D.LE.G....GRLHSL.LLST.WGLP.L..AI | |
Retrocopy | MKTWSSEHVVFGHP*DKVTKITMRRYLNPI<NPGIVGEDMLESGMWWHGRLHSLCLLSTKWGLPGLL*AI |
Parental | LGTSRTLTYIKEHSVVDPAEKKMELCSTNITLTNLVSVNERLVY |
LGTSR.LTYIK.HSVVDP.EKKME..STNI.LTN.VSV...... | |
Retrocopy | LGTSRALTYIK*HSVVDPMEKKMEV*STNIPLTNFVSVRSWYIH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .03 RPM |
SRP017611_liver | 0 .00 RPM | 0 .62 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012800 | 2 retrocopies | |
Mus musculus | ENSMUSG00000024530 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005621 | 8 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022237 | 1 retrocopy |
retro_ocun_723 ,
|
Procavia capensis | ENSPCAG00000001084 | 1 retrocopy |