RetrogeneDB ID: retro_pper_5

Retrocopy location

• Organism: Peach (Prunus persica)
• Coordinates: scaffold_5:15810889..15812134(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: PRUPE_ppa006378mg
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: PRUPE_ppa007722mg
• Aliases: None
• Description: None

Sequence

>retro_pper_5
ATGGCGGCAACATCAGCAGCAGCTAGCTTTTCCATTGGAACCACCTGTTCCCTTGGCCACAAAGCAGTCTCATTTCCACA
GTCAAAGCCTTGTTCTTTGAGGTTCAACTCCCAAAACCCTCTTAGGAGTTCTTTCAATGGCCTCAAGGCAACTACATCTC
TAGCTTGCGAATCTGAGACCTCTTTCTTGGGCAAAGAAACCACCGCAGCTCTTCGAGCTTCTTTTGCTCTAAAAGCCCAC
AAGGGAGCCCAGGTGGTTCAGACTCCGTTTCAACCCCAGGCCTCTTATAAAGTAGCTGTTCTTGGAGCTGCTGGAGGGAT
AGGTCAGCCCCTGGCTCTTTTGATCAAGATGTCCCCTTTGGTCTCTGACCTGCATTTATATGATATAGCAAATGTCAAGG
GTGTTGCTGCTGACCTCAGTCACTGCAACACTCCCTCCCAGGTTCTTGATTTCACCGGAGCTTCTGAGTTAGCCAAGTCA
TTGAAAGGTGTGGATGTGGTGGTCATACCTGCTGGTGTTCCAAGAAAGCCCGGTATGACCCGTGATGACCTCTTCAACAT
CAATGCCGGCATTGTGAAGAACTTGGTTGAGGCTGTGGCTGATAACTGTCCCGAGGCCTTCATCCACATTATCAGTAATC
CGGTGAACTCCACAGTGCCAATTGCTGCAGAAGTTCTAAAGAAGAAGGGTGTTTATAACCCAAAGAAGCTCTTTGGTGTT
ACTACCTTGGATGTTGTGAGGGCAAACACATTTGTTGCTCAGAAGAAGAATCTAAAACTGATTGATGTTGATGTCCCAGT
TGTTGGTGGACATGCTGGGATAACCATTCTACCCCTTCTATCAAAGACAAAACCCTCAGTCAGCCTCACTGATGAAGAAG
TTGAAAAGCTAACTGTAAGGATTCAAAATGCTGGAACCGAGGTTGTAGAGGCAAAGGCTGGTGCTGGGTCTGCAACATTG
TCAATGGCATATGCAGCAGCTAGATTCGTCGAGTCATCTCTGCGTGCACTGGATGGAGATGGGGATGTCTATGAGTGCTC
TTATGTAGAGTCTGATCTGACCGAGCTTCCTTTCTTTGCATCAAGGGTTAAGCTTGGAAGGAAAGGGGTTGAAGCTTTGA
TACCATCTGACCTCCAAGGTTTGACAGAGTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCAGAATTGAAAGCCAGCATT
GAGAAAGGTATTGCATTTGCCAACAAGCAAGCAGTGACTGCTTAG

Alignment

ORF - retro_pper_5 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.51 %
• Parental protein coverage: 87.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AGFRVAVLGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEEALTG
          A...VAVLGAAGGIGQPLA.L.KM.PLVS.LHLYD..N..GV..D.SH..T...V..F.G...L...L.G
Retrocopy ASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADLSHCNTPSQVLDFTGASELAKSLKG

Parental  VDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTFD
          VD.V.IPAGVPRKPGMTRDDLFNINAGIV..L.EA.A..CP.A....ISNPVNSTVPIAAEV.KK.G...
Retrocopy VDVVVIPAGVPRKPGMTRDDLFNINAGIVKNLVEAVADNCPEAFIHIISNPVNSTVPIAAEVLKKKGVYN

Parental  PKKLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPCSFTPKEVDYLTDRIQN
          PKKL.GVT.LDVVRANTFVA....L...DV.VPVVGGHAG.TILPLLS..KP..S.T..EV..LT.RIQN
Retrocopy PKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTKPSVSLTDEEVEKLTVRIQN

Parental  GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDASVVECAFVASQVTELPFFASKVRLGRTGVEEI
          .GTEVVEAKAGAGSATLSMAYAA..F....LR.L.GD..V.EC..V.S..TELPFFAS.V.LGR.GVE..
Retrocopy AGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSYVESDLTELPFFASRVKLGRKGVEAL

Parental  YP--LGPLNEYERAGLERAKKELESSIQKGVSFVRK
          .P..L..L.EYE...LE..K.EL..SI.KG..F..K
Retrocopy IPSDLQGLTEYEQKALEALKPELKASIEKGIAFANK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Prunus persica was not studied using RNA-Seq expression data.

ChIP-Seq

Prunus persica was not studied using ChIP-Seq data.

EST

Prunus persica was not studied using EST data.

TSS

Prunus persica was not studied using FANTOM5 data.

Lab

retro_pper_5 was not experimentally validated.

Homology

Retrocopy orthology:

Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Brachypodium distachyon	BRADI4G00910	1 retrocopy	retro_bdis_5,
Prunus persica	PRUPE_ppa007722mg	1 retrocopy	retro_pper_5 ,
Triticum aestivum	Traes_5AL_31CDB68F2	1 retrocopy	retro_taes_27,