RetrogeneDB ID: | retro_psin_3 | ||
Retrocopy location | Organism: | Chinese softshell turtle (Pelodiscus sinensis) | |
| Coordinates: | JH206810.1:2941419..2941995(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSPSIG00000000873 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RAP2A | ||
| Ensembl ID: | ENSPSIG00000017641 | ||
| Aliases: | None | ||
| Description: | RAP2A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9861] |
Retrocopy-Parental alignment summary:
>retro_psin_3
AGGAAGGAGCTGGGTGTGCGGAGCGGAGCCATGCGAGAATACAAAGTGGTGGTGCTGGGCTCGGGCGGGGTGGGCAAATC
CGCCCTCACCGTGCAGTTCGTGACGGGCTCCTTCATCGAGAAGTATGACCCCACCATCGAAGATTTCTACCGCAAGGAGA
TCGAGGTGGATTCCTCCCCCTCGGTGCTGGAGATCCTGGACACCGCCGGCACTGAGCAGTTCGCCTCCATGCGGGACCTC
TATATCAAGAACGGGCAAGGGTTCATCCTGGTCTACAGCCTGGTCAACCAGCAGAGCTTCCAGGACATCAAGCCTATGCG
GGATCAGATCATCCGGGTGAAGAGGTACGAAAAGGTGCCCATGATCCTGGTGGGCAACAAGGTGGACTTGGAGGGCGAGA
GGGAGGTGTCGTATGGGGAAGGCAAAGCTCTGGCTGAGGAGTGGAGCTGCCCCTTCATGGAAACTTCAGCCAAAAACAAA
GCTTCAGTGGACGAACTGTTTGCAGAGATTGTCAGGCAGATGAACTACGCTTCCCAGCCCAACGGGGACGATCAGTGCTG
CTCGTCCTGCGTGATC
ORF - retro_psin_3 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 85.79 % |
| Parental protein coverage: | 99.46 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDASPSVLEILDTAGTEQFASMRDL |
| MREYKVVVLGSGGVGKSALTVQFVTG.FIEKYDPTIEDFYRKEIEVD.SPSVLEILDTAGTEQFASMRDL | |
| Retrocopy | MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL |
| Parental | YIKNGQGFILVYSLVNQQSFQEEINPCRDGIKRWATYEKVPVILVGNKVDLESEREVSSNEGRALAEEWG |
| YIKNGQGFILVYSLVNQQSFQ..I.P.RD.I.R...YEKVP.ILVGNKVDLE.EREVS..EG.ALAEEW. | |
| Retrocopy | YIKNGQGFILVYSLVNQQSFQ-DIKPMRDQIIRVKRYEKVPMILVGNKVDLEGEREVSYGEGKALAEEWS |
| Parental | CPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPCCSACNI |
| CPFMETSAK.K..VDELFAEIVRQMNYA.QP..DD.CCS.C.I | |
| Retrocopy | CPFMETSAKNKASVDELFAEIVRQMNYASQPNGDDQCCSSCVI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Pelodiscus sinensis was not studied using RNA-Seq expression data.
Pelodiscus sinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_psin_3 retrocopy.
Pelodiscus sinensis was not studied using FANTOM5 data.
retro_psin_3 was not experimentally validated.
Retrocopy orthology:
Pelodiscus sinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Pelodiscus sinensis | ENSPSIG00000017641 | 1 retrocopy |
retro_psin_3 ,
|
| Drosophila melanogaster | FBgn0025806 | 1 retrocopy |