RetrogeneDB ID: | retro_ptro_141 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:39999365..39999683(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC25 | ||
Ensembl ID: | ENSPTRG00000020109 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.46 % |
Parental protein coverage: | 51.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GENIEDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKV |
GENIEDIPKEVLMDCAHLVKA.SIQGCKMN.VNVVYTP.SNLKKTADMDVG.IGFHRQKDVK.VT.EKKV | |
Retrocopy | GENIEDIPKEVLMDCAHLVKASSIQGCKMN-VNVVYTPQSNLKKTADMDVGHIGFHRQKDVKVVTWEKKV |
Parental | NEILNRLEKTKVERFPDLAAEKECRDREERNEKKAQI |
NEILNRLEKTKVERFPDLAAEKECRDREERNEK.AQI | |
Retrocopy | NEILNRLEKTKVERFPDLAAEKECRDREERNEKTAQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 37 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 30 .08 RPM |
SRP007412_heart | 0 .00 RPM | 37 .10 RPM |
SRP007412_kidney | 0 .00 RPM | 32 .06 RPM |
SRP007412_liver | 0 .00 RPM | 32 .67 RPM |
SRP007412_testis | 0 .21 RPM | 44 .58 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_477 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012971 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000006595 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006478 | 1 retrocopy | |
Homo sapiens | ENSG00000147419 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009685 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015976 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018468 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000020109 | 1 retrocopy |
retro_ptro_141 ,
|
Tarsius syrichta | ENSTSYG00000000732 | 1 retrocopy |