RetrogeneDB ID: | retro_ptro_2490 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 6:140030822..140031592(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTCH1 | ||
Ensembl ID: | ENSPTRG00000018115 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.01 % |
Parental protein coverage: | 69.35 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | PTLGTNVLGRKVLYLPSFFTYAKYIVQVDGKIGLFRGLSPRLMSNALSTVTR-GSMKKVFPPDEIEQVSN |
P.....VLGRKVLYLPSFFTYAKYIVQVDGKIGLF.G..P.LMSNAL.TVTR.GSMKK.FP.DEI.QVSN | |
Retrocopy | PNTKPYVLGRKVLYLPSFFTYAKYIVQVDGKIGLFQGPRPQLMSNALFTVTR<GSMKKAFPLDEI*QVSN |
Parental | KDDMKTSLKKVVKETSYEMMMQCVSRMLAHPLHVISMRCMVQFVGREAKYSGVLSSIGKIFKEEGLLGFF |
K..MKTSLKKVVKETSY..MMQCVSRML.HPLHVISM..MVQFVG.EAK.SGVLSSI.K.FKEEGLLGF. | |
Retrocopy | KGGMKTSLKKVVKETSYGIMMQCVSRMLTHPLHVISMCWMVQFVGWEAKDSGVLSSIEKLFKEEGLLGF- |
Parental | VGLIPHLLGDVVFLWGCNLLAHFINAYLVDDSFSQALAIRSYTKFVMGIAVSMLTYPFLLVGDLMAVNNC |
VGLIPHLLGDVVFL.GCNLLA.FI.AYLVDDS..QALAIRS.TK...GIAVSMLTYPFLLVGDLMAVNNC | |
Retrocopy | VGLIPHLLGDVVFL*GCNLLAYFISAYLVDDSLHQALAIRSHTKCLTGIAVSMLTYPFLLVGDLMAVNNC |
Parental | GLQAGLPPYSPVFKSWIHCWKYLSVQGQLFRGSSLLFRRVSSGSCFALE |
G.QAGLP.YSPVFKSWIHCWKYLS..GQLF.GSSLLF..VSSGS.F.LE | |
Retrocopy | GPQAGLPRYSPVFKSWIHCWKYLSM*GQLFQGSSLLFHWVSSGSPFTLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 372 .86 RPM |
SRP007412_cerebellum | 0 .07 RPM | 155 .37 RPM |
SRP007412_heart | 0 .00 RPM | 68 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 180 .34 RPM |
SRP007412_liver | 0 .03 RPM | 72 .18 RPM |
SRP007412_testis | 0 .00 RPM | 41 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3671 |
Gorilla gorilla | retro_ggor_2481 |
Pongo abelii | retro_pabe_3011 |
Callithrix jacchus | retro_cjac_2480 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000137409 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003908 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021976 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010899 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016557 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000003573 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018115 | 1 retrocopy |
retro_ptro_2490 ,
|
Tarsius syrichta | ENSTSYG00000014777 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001966 | 2 retrocopies |