RetrogeneDB ID: | retro_ptro_2825 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 9:37977143..37978308(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KCTD9 | ||
Ensembl ID: | ENSPTRG00000020092 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MRRVTLFLNGSPKNGKVVAV-YGTLSDLLSVASSKLGIKATSVYNGKGGLIDDIALIRDDDVLFVCEGEP |
MRRVTLFLNGSPKNGKVVA..YGTLSDLLS.ASSKLGIKATSVYNGKGGL.DDI.LIRDDDVLFVCEGEP | |
Retrocopy | MRRVTLFLNGSPKNGKVVAD<YGTLSDLLSGASSKLGIKATSVYNGKGGLNDDIVLIRDDDVLFVCEGEP |
Parental | FIDPQTDSKPPEGLSGFHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLID |
FIDPQTDSKPPEGL.GFHTDWLTL.VGG.YFTTT.STLVNKEPD.MLAHMFKDKGVWG.KQDHRGAFLID | |
Retrocopy | FIDPQTDSKPPEGLLGFHTDWLTLHVGGQYFTTTWSTLVNKEPDIMLAHMFKDKGVWGDKQDHRGAFLID |
Parental | RSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFL |
.SP.YFEPILNYLRHGQLIVNDGI.LLGVLEEARFFGIDSLIEHL.VAIKNSQPPEDH.PISRKEFVR.L | |
Retrocopy | QSPGYFEPILNYLRHGQLIVNDGIDLLGVLEEARFFGIDSLIEHLKVAIKNSQPPEDHLPISRKEFVRCL |
Parental | LATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVK |
LATPTKSE.RCQGLNFSGA.LS.LDLRYINFK..NL..CNLAHANLCCANLE.ADLSGSVLDCANLQGVK | |
Retrocopy | LATPTKSEMRCQGLNFSGAELSHLDLRYINFKITNLNCCNLAHANLCCANLE*ADLSGSVLDCANLQGVK |
Parental | -MLCSNAEGASLKLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGT |
.MLCSNAEGASLK.CNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNC.LRGATL.GT | |
Retrocopy | <MLCSNAEGASLKRCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCSLRGATLTGT |
Parental | DLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR |
DLENCDLSGCDLQEANLRGSNV.GA.FEEMLTPLH.SQSVR | |
Retrocopy | DLENCDLSGCDLQEANLRGSNVRGARFEEMLTPLHVSQSVR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .67 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .95 RPM |
SRP007412_heart | 0 .00 RPM | 16 .58 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .75 RPM |
SRP007412_liver | 0 .00 RPM | 2 .39 RPM |
SRP007412_testis | 0 .00 RPM | 8 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4156 |
Gorilla gorilla | retro_ggor_2791 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012157 | 1 retrocopy | |
Homo sapiens | ENSG00000104756 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000010151 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009629 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020092 | 3 retrocopies |
retro_ptro_1225, retro_ptro_2166, retro_ptro_2825 ,
|