RetrogeneDB ID: | retro_rnor_1863 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:9590459..9590838(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUB1 | ||
Ensembl ID: | ENSRNOG00000050563 | ||
Aliases: | Sub1, Rpo2tc1 | ||
Description: | Activated RNA polymerase II transcriptional coactivator p15 [Source:UniProtKB/Swiss-Prot;Acc:Q63396] |
Percent Identity: | 80.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPKSKELVSSSSSGSDSDSEVEKKLKRKKQVVPEKPVKKQKPGESSRALASSKQSSSSR-DDNMFQIGKM |
MPKSKELVS.SSSGSDSDSEVEKKLK..KQVV.EK.VKKQKPGE.SRALASS...SSS..D...FQIGKM | |
Retrocopy | MPKSKELVS*SSSGSDSDSEVEKKLKGEKQVVSEKSVKKQKPGERSRALASS-ELSSSS>DMITFQIGKM |
Parental | RYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAVRKL |
RYVSVR.FK.KILIDIREYWMDS.GEMKP.R..ISL.ME..SQLKEQI.DI.DAVRKL | |
Retrocopy | RYVSVRGFKVKILIDIREYWMDSDGEMKPLRQAISLDMEKLSQLKEQIPDIGDAVRKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 249 .70 RPM |
SRP017611_kidney | 0 .00 RPM | 67 .90 RPM |
SRP017611_liver | 0 .00 RPM | 35 .90 RPM |