RetrogeneDB ID: | retro_rnor_735 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:30950365..30950721(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUB1 | ||
Ensembl ID: | ENSRNOG00000050563 | ||
Aliases: | Sub1, Rpo2tc1 | ||
Description: | Activated RNA polymerase II transcriptional coactivator p15 [Source:UniProtKB/Swiss-Prot;Acc:Q63396] |
Percent Identity: | 74.17 % |
Parental protein coverage: | 92.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPKSKELV-SSSSSGSDSDSEV-EKKLKRKKQVVPEKPVKKQKPGESSRALASSKQSSSSRDDNMFQIGK |
MPKSKELV.SSSS...........KKL.RKKQVVPEK..KKQKPGE..RALASSKQS..SRDD...QIGK | |
Retrocopy | MPKSKELVPSSSSGSDSDSEVK<KKKLERKKQVVPEKTAKKQKPGETRRALASSKQSCNSRDDDLSQIGK |
Parental | MRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQIS |
...VSVRDFKGK.L.D.REYW.DSEGEMKPGRKG.SLNMEQWS.LKEQIS | |
Retrocopy | VGSVSVRDFKGKLLVDLREYWVDSEGEMKPGRKGVSLNMEQWSWLKEQIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 249 .70 RPM |
SRP017611_kidney | 0 .00 RPM | 67 .90 RPM |
SRP017611_liver | 0 .00 RPM | 35 .90 RPM |