RetrogeneDB ID: | retro_sara_202 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_7020:42426..42951(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSSARG00000010806 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 84.57 % |
Parental protein coverage: | 74.15 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVND |
.ISIDKTGENFRL..DTKG.FA.HR..P.E.KYKLCKVRK.FVGTKGIPHLVTHDARTI.YPDPLIKVND | |
Retrocopy | LISIDKTGENFRLNDDTKGCFAIHRVIPVEVKYKLCKVRKVFVGTKGIPHLVTHDARTIHYPDPLIKVND |
Parental | TIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVI |
T.QIDLE..KIT.FIKFD.GNLC.VTGGAN.GRIGVITNRE.HPGSFDV.HVKDANGNSFAT.L.NIFVI | |
Retrocopy | TTQIDLESVKITVFIKFDSGNLCLVTGGANVGRIGVITNREKHPGSFDVIHVKDANGNSFATCLTNIFVI |
Parental | GKGNKPWISLPRGKSIRLTIAEERDKRLAAKQSSG |
GKGNK.WISLP.GKSI.LTIAEERDKRLAA..SSG | |
Retrocopy | GKGNKSWISLPQGKSICLTIAEERDKRLAA*KSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014601 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006337 | 3 retrocopies | |
Equus caballus | ENSECAG00000010852 | 6 retrocopies | |
Homo sapiens | ENSG00000129824 | 1 retrocopy | |
Meleagris gallopavo | ENSMGAG00000009671 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000011070 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005294 | 11 retrocopies | |
Otolemur garnettii | ENSOGAG00000011808 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000022470 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003201 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010806 | 6 retrocopies |