RetrogeneDB ID:

retro_ogar_229

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873533.1:11288753..11289545(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000025236
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000011808
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_229
ATGGCTCGTGGCCCCAAGAAGCATCTGAAGCGGGTAGCAGCTCCAAAGCATTGGATGCTGGATAAATTGACCGGCGTGTT
TGCTCCTCGTCCATCCACTGGTCCCCACAAGCTGAGAGAGTGTCTTCCACTCATCATTTTCCTAAGAAACAGGCTTAAGT
ATGCCCTGACAGGAGATGAAGTAAAGAAGATTTGTATGCAGCGCTTCATTAAGATCGATGGCAAGGTCAGAACTGATATA
ACCTATCCTGCTGGTTTTATGGATGTTATCAGCATTGACAAGACTGGAGAGAATTTCCGTCTGGTGTATGACACGAAGGG
TCGTTTTGCTGTTCACCGTATTACACCTGAAGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAAATCTTTGTGGGCACAA
AAGAAATCCCTCATCTGGTGACCCATGATGCTCGTACCATCCGCTATCCTGATCCCCTCATCAAAGTGAATGACACCATT
CAGATTGATTTGGAGACTGGCAAGATTACTGATTTCGTCAAGTTTGACACGGGTAACCTGTGTATGGCGACTGGAGGAGC
TAACCTGGGAAGAATTGGTGTGATCACCAACAGAGAAAGACATCCTGGGTCTTTTGATGTAGTTCATGTGAAAGATGCCA
ATGGCAACAGCTTTGCCACTCGCCTCTCCAACATTTTTGTTATTGGCAAAGGTAACAAACCATGGATTTCTCTTCCCCGA
GGAAAAGGTATCCGCCTGACCATTGCTGAAGAGAGGGACAAGAGACTGGCGGCCAAACAGAGCAGTGGGTGA

ORF - retro_ogar_229 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.85 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIK
ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIK
RetrocopyARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIK
ParentalIDGKVRTDITYPAGFMDVISIDKTGENFRLVYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVT
IDGKVRTDITYPAGFMDVISIDKTGENFRLVYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTK.IPHLVT
RetrocopyIDGKVRTDITYPAGFMDVISIDKTGENFRLVYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKEIPHLVT
ParentalHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVK
HDARTIRYPDPLIKVNDTIQIDLETGKITDF.KFDTGNLCM.TGGANLGRIGVITNRERHPGSFDVVHVK
RetrocopyHDARTIRYPDPLIKVNDTIQIDLETGKITDFVKFDTGNLCMATGGANLGRIGVITNRERHPGSFDVVHVK
ParentalDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG
DANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG
RetrocopyDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_229 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 36 parental genes, and 360 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000146011 retrocopy
Ailuropoda melanoleuca ENSAMEG0000000580514 retrocopies
Bos taurus ENSBTAG000000188005 retrocopies
Canis familiaris ENSCAFG000000171512 retrocopies
Callithrix jacchus ENSCJAG000000041922 retrocopies
Cavia porcellus ENSCPOG000000063373 retrocopies
Dipodomys ordii ENSDORG000000085714 retrocopies
Equus caballus ENSECAG000000108526 retrocopies
Felis catus ENSFCAG0000001204111 retrocopies
Homo sapiens ENSG000001298241 retrocopy
Homo sapiens ENSG0000019803419 retrocopies
Gorilla gorilla ENSGGOG0000002307918 retrocopies
Loxodonta africana ENSLAFG000000026544 retrocopies
Macropus eugenii ENSMEUG0000000796916 retrocopies
Meleagris gallopavo ENSMGAG000000096711 retrocopy
Microcebus murinus ENSMICG0000001660658 retrocopies
Myotis lucifugus ENSMLUG000000116855 retrocopies
Macaca mulatta ENSMMUG000000032957 retrocopies
Monodelphis domestica ENSMODG000000110701 retrocopy
Mustela putorius furoENSMPUG0000000529411 retrocopies
Mus musculus ENSMUSG0000003132013 retrocopies
Nomascus leucogenys ENSNLEG0000001812125 retrocopies
Otolemur garnettii ENSOGAG00000011808 2 retrocopies
retro_ogar_121, retro_ogar_229 ,
Procavia capensis ENSPCAG000000007613 retrocopies
Pongo abelii ENSPPYG0000002046224 retrocopies
Pan troglodytes ENSPTRG000000220259 retrocopies
Pan troglodytes ENSPTRG000000224701 retrocopy
Pteropus vampyrus ENSPVAG0000001288221 retrocopies
Rattus norvegicus ENSRNOG000000032011 retrocopy
Sorex araneus ENSSARG000000108066 retrocopies
Sus scrofa ENSSSCG000000124055 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000286928 retrocopies
Tupaia belangeri ENSTBEG0000000291820 retrocopies
Tarsius syrichta ENSTSYG0000000313716 retrocopies
Tursiops truncatus ENSTTRG0000000616413 retrocopies
Vicugna pacos ENSVPAG000000109524 retrocopies



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