RetrogeneDB ID: retro_sara_42

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: GeneScaffold_7245:4588..5008(-)
• Located in intron of: ENSSARG00000009435

Retrocopy information

• Ensembl ID: ENSSARG00000009445
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSSARG00000009758
• Aliases: None
• Description: None

Sequence

>retro_sara_42
ATCACTTATGTGAAAGGAGATCTTTTTGCATGCCCCCCAACAGACTCTTTAGCCCACTGTATCAGTGAGGATTGTCGAAT
GGGAGCTGGAATTGCTGTTCTTTTCAAGAAGAAATTTGGAGGGGTACAGGATCTGATAAGTCAACAAAAGAAAACCGGAG
GAGTGGTTGTTCTGAAGAGAGATGGGCGATACATATATTACTTGATTACAAAGAAAAGGGCTTCACACAAGCCAACGTAT
GAAAACTTACGGAAGAGTTTAGAAGCCATGAAGTCTCGTTGTCTGCAAAATGGAGTCACAGACCTCTGCATGCCCAGGAT
TGGATGTGGTCTTGATGGTCTTCAGTGGGAAAATGTATCTGTGATGATTGAGGAGGTATTTGAGACAACAGACATCAGAA
TTACTGTGTACGCACTTTGA

Alignment

ORF - retro_sara_42 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.3 %
• Parental protein coverage: 60.26 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KKTGEVAVLKRDGRYIYYLITKKRASHKPAYENLQKSLEAMKSHCLQNGVTDLSMPRGNPGIGCGLDGLQ
          KKTG.V.VLKRDGRYIYYLITKKRASHKP.YENL.KSLEAMKS.CLQNGVTDL.MPR....IGCGLDGLQ
Retrocopy KKTGGVVVLKRDGRYIYYLITKKRASHKPTYENLRKSLEAMKSRCLQNGVTDLCMPR----IGCGLDGLQ

Parental  WENVSVMIEEVFEATDIRITVYAL
          WENVSVMIEEVFE.TDIRITVYAL
Retrocopy WENVSVMIEEVFETTDIRITVYAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_42 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Sorex araneus	ENSSARG00000009758	1 retrocopy	retro_sara_42 ,
Tupaia belangeri	ENSTBEG00000003787	1 retrocopy	retro_tbel_649,
Tarsius syrichta	ENSTSYG00000007174	3 retrocopies	retro_tsyr_17, retro_tsyr_1818, retro_tsyr_7,