RetrogeneDB ID: retro_tsyr_1818

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_603134:194..647(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTSYG00000007174
• Aliases: None
• Description: None

Sequence

>retro_tsyr_1818
ATGGCCAGCAGCCTTAAAGAAGAGCCAGAAGGAAGCAGAATCACTTATGTGAAAGGAGACCTTTTTGCATGCCCTAAAAC
AGACTCTTTAGCCCACTGTAGTGAGGATTGTTGCATGGGTGCTGGGATAGCTGTCCTCTTCAAGAAGAAATTTGGAGGGG
TGCAAGAATTGTTAAATCAACAAAAAAAATCTGGAGAAGTGGCTGTTCTGAAGCAAGATGGGCGGTATATATATTACTTG
ATTACAAAGAAAAGGACTTCACACAAGTCAACTTATGAAAACTTACAGAAGAGTTGAGAAGCTATGAAGTCTCATTGTCT
GAAGAATGGAGTCACAGACATCTCCATGCCCAGTATCGGGTGTGGTCTTGATCATCTGCAATGGAAAAATGTATCTGCAA
TGATTGAAGAGGTATTTGAGGCAACAGACATCAAAATTACCGTGTACACACTC

Alignment

ORF - retro_tsyr_1818 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.11 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASSLNEEPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAV
          MASSL.EEPEGSRITYVKGDLFACPKTDSLAHC.SEDC.MGAGIAVLFKKKFGGVQELLNQ...SGEVAV
Retrocopy MASSLKEEPEGSRITYVKGDLFACPKTDSLAHC-SEDCCMGAGIAVLFKKKFGGVQELLNQXXXSGEVAV

Parental  LKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDISMPRIGCGLDRLQWKNVSAMIEEVF
          LK.DGRYIYYLITKKR.SHK.TYENLQKS.EAMKSHCLKNGVTDISMP.IGCGLD.LQWKNVSAMIEEVF
Retrocopy LKQDGRYIYYLITKKRTSHKSTYENLQKS*EAMKSHCLKNGVTDISMPSIGCGLDHLQWKNVSAMIEEVF

Parental  EATDIKITVYTL
          EATDIKITVYTL
Retrocopy EATDIKITVYTL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1818 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Sorex araneus	ENSSARG00000009758	1 retrocopy	retro_sara_42,
Tupaia belangeri	ENSTBEG00000003787	1 retrocopy	retro_tbel_649,
Tarsius syrichta	ENSTSYG00000007174	3 retrocopies	retro_tsyr_17, retro_tsyr_1818 , retro_tsyr_7,