RetrogeneDB ID: retro_sara_447

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_210864:6816..7316(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSSARG00000007846
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NAA50
• Ensembl ID: ENSSARG00000004134
• Aliases: None
• Description: N(alpha)-acetyltransferase 50, NatE catalytic subunit [Source:HGNC Symbol;Acc:29533]

Sequence

>retro_sara_447
ATGAAAGGTAACCGGATTGAGCTGGAAGATGTGACACCACACAATATTAAACAGTTGAAGAGATTGAACCAGGTCATCTT
TCCAGTCAGCTACAATGACAAGTTCTACAAGGATGTGCTGGAGGTTGGCGAGCTAGCAAAACTTGTCTATTTCAATGATA
CCGCAGTAGGTGCAGTATGCTGTAGGGTGGATCATTCACAGAATCAGAAGAGACTTTACATCATGACACCAGGATGTCTG
GCTCCATACCCAAGGCTAGAAATAGGAACTAAAATGTTAAATCATGTCTTAAACATCTGTGAAAAAGATGGCACTTTTGA
CATTTACCTTCATGTGCAGATCAGCAATGAGTCAGCAATTGACTTCTACAGAAAATTTGGCTTTAAGGTTATTGAGACAA
GAACTACTATAAGAGAATAGAGCCCACAGATGCTCACGTGCTGCAGAAAAACCTCAAAGTCCCTTCTGGCCAGAATGCAG
ATGTGCAAAAGACAGACAAC

Alignment

ORF - retro_sara_447 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.76 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MKGSRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQK
          MKG.RIEL.DVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKL.YFND.AVGAVCCRVDHSQNQK
Retrocopy MKGNRIELEDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLVYFNDTAVGAVCCRVDHSQNQK

Parental  RLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEVIET-KKNYY
          RLYIMT.GCLAPY.RL.IGTKMLNHVLNICEKDGTFD.IYLHVQISNESAIDFYRKFGF.VIET.K..Y.
Retrocopy RLYIMTPGCLAPYPRLEIGTKMLNHVLNICEKDGTFD-IYLHVQISNESAIDFYRKFGFKVIET<KNYY-

Parental  KRIEPADAHVLQKNLKVPSGQNADVQKTDN
          KRIEP.DAHVLQKNLKVPSGQNADVQKTDN
Retrocopy KRIEPTDAHVLQKNLKVPSGQNADVQKTDN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_447 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000001027	1 retrocopy	retro_dnov_2574,
Homo sapiens	ENSG00000121579	1 retrocopy	retro_hsap_874,
Nomascus leucogenys	ENSNLEG00000004624	1 retrocopy	retro_nleu_2586,
Otolemur garnettii	ENSOGAG00000011197	1 retrocopy	retro_ogar_157,
Procavia capensis	ENSPCAG00000009780	2 retrocopies	retro_pcap_205, retro_pcap_459,
Sorex araneus	ENSSARG00000004134	1 retrocopy	retro_sara_447 ,
Ictidomys tridecemlineatus	ENSSTOG00000009438	1 retrocopy	retro_itri_1703,
Tursiops truncatus	ENSTTRG00000009849	3 retrocopies	retro_ttru_1729, retro_ttru_1814, retro_ttru_948,