RetrogeneDB ID: | retro_sara_477 | ||
Retrocopy location | Organism: | Shrew (Sorex araneus) | |
| Coordinates: | scaffold_220848:3384..4530(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | XPNPEP3 | ||
| Ensembl ID: | ENSSARG00000012028 | ||
| Aliases: | None | ||
| Description: | X-prolyl aminopeptidase (aminopeptidase P) 3, putative [Source:HGNC Symbol;Acc:28052] |
Retrocopy-Parental alignment summary:
>retro_sara_477
TTGCTCTCAGCATCTAAATTAGTTCCTGCCAAAACACGTGCCTGTGGCCTCTCAGGATGCTGGTCCTGTTCCCGCAAAAA
TACACTCTCCAGCCCATCCCAGAGAGGAAAATCCCAAACAGCTACTTAGGCCAGCACAGCTTCTTCACACCCCCTCACCT
CCTCAGATCAGGGGAGGTGAGGCCAGGACTTTCCCAGGTGGAATATGCACTTCGCAGACACAGATTAATGTCTCTGATCC
GCCAGGAGATACAAGGGCAGAGTGGGACAGACCACACTGTGGTTCTGTTGTCTAACCCTACGTACTACATGAGCAATGAC
ATCCCCTATACCTTCCATCAAGACAACAATTTCTTGTACTTGTGTGGATTCCAAGAGCCTAATAGCATTCTGGTCCTTCA
GAGCCTCCCTGGCAAGCAGTTACCAGAGCACAAGGCCATGCTTTTTGTGCCTTGGAGAGACCTCAGTCGAGAACTTTGGG
ATGGCCCACGGTCTGGAACTGATGGGGCAATTGCCCTCAGGGGCGTGGATGAAGCCTACACCCTGGAAGAATTTCAGCAC
CTGATCCCAAGACTGAAAGCTGAGGCAACTACAGTATGGTATGACTGGATGAGACCGAGTCCCACGCAGCTTCTCTGTGG
CTGCATGCAGCATCTGACCGAGGCCAAGGCCAAGAGCAAGAACAAGGTCCGGGCTGTCCAGCAGCTGATCCAGTGCCTCT
GGCTCATCAAATCCTCTGCAGAAAGCGAGTTAATGCAGATTGCTGGCAAGTTGACATCAGAGGCTTTCATAGAGACCATG
TCTGCCAGGAAGGCTCCCGTGGGAGAAGCCTTCCTGTAACGCCAAGTTTGAGTTCAAGTGCAGGGCCCGAGGTGCCGACG
TCCTGGCCTACCCGCCCGTGGTTGCTGGAGGAAGCCGTTCGAACACTCTGCACTATGTGAAGAACAACCAACTGATCAAG
GACTGCGAGATGGCGCTGCTGGATGGTGGCTGTGAGTCCTCGGGCTATGTGAGTGACATCACCCGCACCTGGCCTGTGAA
TGGCAGGTTCACGGCAGCTCAGGCAGAGCTCTGCGAAGCCATGCTCGAGGTCCAGAGGGACTGTCTGATGCTCTGCTCTC
CCAGGACGAGCCTGGAGAACGTCTAC
ORF - retro_sara_477 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 85.19 % |
| Parental protein coverage: | 76.14 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | LLSASKLVPAKAHVRSLSGCWSCSRR-RYSLQPIPERRIPNRYLGQPSPFTHPHLLRPGEVTPGLSQVEY |
| LLSASKLVPAK.....LSGCWSCSR...Y.LQPIPER.IPN.YLGQ.S.FT.PHLLR.GEV.PGLSQVEY | |
| Retrocopy | LLSASKLVPAKTRACGLSGCWSCSRK<KYTLQPIPERKIPNSYLGQHSFFTPPHLLRSGEVRPGLSQVEY |
| Parental | ALRRHKLMSLIHEETQGQSGTDHTVVLLSNPTYYMSNDIPYTFHQDNNFLYLCGFQEPDSILVLQSLPGK |
| ALRRH.LMSLI..E.QGQSGTDHTVVLLSNPTYYMSNDIPYTFHQDNNFLYLCGFQEP.SILVLQSLPGK | |
| Retrocopy | ALRRHRLMSLIRQEIQGQSGTDHTVVLLSNPTYYMSNDIPYTFHQDNNFLYLCGFQEPNSILVLQSLPGK |
| Parental | QLPAHKAVLFVPRRDHSRELWDGPRSGTDGAIALTGVDEAYTLEEFQHLIPRLKAEATTVWYDWMKPSHT |
| QLP.HKA.LFVP.RD.SRELWDGPRSGTDGAIAL.GVDEAYTLEEFQHLIPRLKAEATTVWYDWM.PS.T | |
| Retrocopy | QLPEHKAMLFVPWRDLSRELWDGPRSGTDGAIALRGVDEAYTLEEFQHLIPRLKAEATTVWYDWMRPSPT |
| Parental | QLHSGYMQHLTEAKAKSKNKVRAVQQLIQRLRLIKSPAEIELMQIAGKLTSEAFIETMCASKAPVGEAFL |
| QL..G.MQHLTEAKAKSKNKVRAVQQLIQ.L.LIKS.AE.ELMQIAGKLTSEAFIETM.A.KAPVGEAFL | |
| Retrocopy | QLLCGCMQHLTEAKAKSKNKVRAVQQLIQCLWLIKSSAESELMQIAGKLTSEAFIETMSARKAPVGEAFL |
| Parental | -YAKFEFECRARGADILAYPPVVAGGNRSNTLHYVKNNQLIKDGEMVLLDGGCESSGYVSDITRTWPVSG |
| ..AKFEF.CRARGAD.LAYPPVVAGG.RSNTLHYVKNNQLIKD.EM.LLDGGCESSGYVSDITRTWPV.G | |
| Retrocopy | >NAKFEFKCRARGADVLAYPPVVAGGSRSNTLHYVKNNQLIKDCEMALLDGGCESSGYVSDITRTWPVNG |
| Parental | RFSAARAELYETRARRSRRDCLTLCSPRTSLENVH |
| RF.AA.AEL.E.......RDCL.LCSPRTSLENV. | |
| Retrocopy | RFTAAQAELCEAML-EVQRDCLMLCSPRTSLENVY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_477 was not experimentally validated.
Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sorex araneus | ENSSARG00000012028 | 2 retrocopies |
retro_sara_477 , retro_sara_757,
|