RetrogeneDB ID: retro_sara_757

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_8592:3013..3800(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: XPNPEP3
• Ensembl ID: ENSSARG00000012028
• Aliases: None
• Description: X-prolyl aminopeptidase (aminopeptidase P) 3, putative [Source:HGNC Symbol;Acc:28052]

Sequence

>retro_sara_757
GATGGCCCACGGTCTGGAACTGATGGGACAATCACCCTCAGGGGCGTGGATGAAGCCTACACCCTGGAAGAATTTCAGCA
CCTGATCCCAAGACTGAAAGCCGAGGCGACTACAGTGTGGTATGACTGGATGAGATCAAGTCCCACGCAGCTTCTCTCTG
GCTGCATGCAGCATCTGACCGAGGCCAAGGCCAAGAGCAGGAACAAGGCCCAGGCTGTCCAGCAGCTGATCCAGTGCCTC
TGGCTCATCAAATCCTCTGCAGAAAGCAAGTTAATGCAGATTGCTGGCAAGTTGATGTCAGAGGCTTTCATAGAGACCAT
GTCTGCCAGGAAGGCTCCCGTGGGAGAAGCCTTCCTGTAACGCCAAGTTTGAGTTCAAGTGCAGGGCCCGAGGTGCCGAC
ATCCTGGCTTACCCGCCCGTGGTTGCTGGAGGGAGCCGTTCAAACACTCTGCACTATATGAAGAACAACCAACTGATCAA
GGATGGCGAGATGGTGCTGCTGGATGGTGGCTGTGAGTCCTTGGGCTATGTGAGTGACATCACCCGCACCTGGCCTGTCA
ATGGCAGGTTCACAGCAGCTCAGGCAGAGCTCTGCGAAGCCGTGCTCGAGGTCCAGAGGGACTGTCTGATGCTCTGCTCT
CTTGGGACGAGCCTGGAGAACGTCTACTCCATGATGCTGACCCTGATCGGACAGAAGCTCCAAGAGCTGGGCATCCTGAA
GGACACGCAGGACGGCAGCGCCTTCAAGGCTGCTTGAAAATACTGCCCTCACCATGTGGGCCATTAC

Alignment

ORF - retro_sara_757 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.06 %
• Parental protein coverage: 52.09 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DGPRSGTDGAIALTGVDEAYTLEEFQHLIPRLKAEATTVWYDWMKPSHTQLHSGYMQHLTEAKAKSKNKV
          DGPRSGTDG.I.L.GVDEAYTLEEFQHLIPRLKAEATTVWYDWM..S.TQL.SG.MQHLTEAKAKS.NK.
Retrocopy DGPRSGTDGTITLRGVDEAYTLEEFQHLIPRLKAEATTVWYDWMRSSPTQLLSGCMQHLTEAKAKSRNKA

Parental  RAVQQLIQRLRLIKSPAEIELMQIAGKLTSEAFIETMCASKAPVGEAFL-YAKFEFECRARGADILAYPP
          .AVQQLIQ.L.LIKS.AE..LMQIAGKL.SEAFIETM.A.KAPVGEAFL..AKFEF.CRARGADILAYPP
Retrocopy QAVQQLIQCLWLIKSSAESKLMQIAGKLMSEAFIETMSARKAPVGEAFL>NAKFEFKCRARGADILAYPP

Parental  VVAGGNRSNTLHYVKNNQLIKDGEMVLLDGGCESSGYVSDITRTWPVSGRFSAARAELYETRARRSRRDC
          VVAGG.RSNTLHY.KNNQLIKDGEMVLLDGGCES.GYVSDITRTWPV.GRF.AA.AEL.E.......RDC
Retrocopy VVAGGSRSNTLHYMKNNQLIKDGEMVLLDGGCESLGYVSDITRTWPVNGRFTAAQAELCEA-VLEVQRDC

Parental  LTLCSPRTSLENVHLVMLTLIGQKLQELGRLKDTKNGTAFKXXXK-CPHHVGHY
          L.LCS..TSLENV...MLTLIGQKLQELG.LKDT..G.AFK...K.CPHHVGHY
Retrocopy LMLCSLGTSLENVYSMMLTLIGQKLQELGILKDTQDGSAFKAA*KYCPHHVGHY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_757 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Sorex araneus	ENSSARG00000012028	2 retrocopies	retro_sara_477, retro_sara_757 ,