RetrogeneDB ID: | retro_sara_588 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_236075:4099..4974(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAFAH1B1 | ||
Ensembl ID: | ENSSARG00000002826 | ||
Aliases: | None | ||
Description: | platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) [Source:HGNC Symbol;Acc:8574] |
Percent Identity: | 60.41 % |
Parental protein coverage: | 73.18 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | NRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYACLLEKKCTSVIRLQKRVMELESKLNEAKEEFTS |
.R.IADYL.SNG.E.AY..FK..AELDM..ELDKKYA.LLEKK.TS.I.L.K..M.LE.K.N..KEE... | |
Retrocopy | SRVIADYLCSNGFEQAYYIFKM*AELDMSQELDKKYARLLEKK*TSSISL*KKFMDLELKIN*EKEEPKT |
Parental | GGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD |
...L.Q..D..EW.P...EKYA...HRS.V...IFHPVF..MVSAS..ATIK.WDYETG..E.TLK.HTD | |
Retrocopy | IVHLVQTQDLIEWVPLVLEKYAFNDHRSLVSSKIFHPVFIIMVSASGNATIKTWDYETGTLEQTLKAHTD |
Parental | SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVA-IMPNGDHIVSASRDKTIKMWE |
S...IS.D.SGK.LASCS.D..IKLWDFQ....I.T...HDH.VS.VA..MP.G..IV.AS.DKT.KMW. | |
Retrocopy | SD*CISLDQSGKSLASCSVDTVIKLWDFQSCLLIITSYSHDHDVSLVA<LMPIGGCIVFASQDKTLKMWD |
Parental | VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSY |
...G.C.K.FTGH..WV.M...NQDGTLI.S.S.D.TVRVWV.AT..CK.EL.EH...VECISWAPE... | |
Retrocopy | IHNGHCMKIFTGHMKWVCMMQLNQDGTLITS*SQDCTVRVWVIATTQCKKELQEHQYAVECISWAPENAH |
Parental | SSISEATGSETKK |
.S..EA..S.T.K | |
Retrocopy | LSTVEARDSHTEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000007168 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000010776 | 2 retrocopies | |
Mus musculus | ENSMUSG00000020745 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007796 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008551 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002826 | 4 retrocopies |