RetrogeneDB ID: | retro_shar_129 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834422.1:939857..940631(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTRF1L | ||
Ensembl ID: | ENSSHAG00000017997 | ||
Aliases: | None | ||
Description: | mitochondrial translational release factor 1-like [Source:HGNC Symbol;Acc:21051] |
Percent Identity: | 74.81 % |
Parental protein coverage: | 68.67 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | AVRCLWAGGALVRAPSRPVSSGNLQLEELFASGGAMRSFLERLEKPRFQAPSWVQGPELAMATQRLREKE |
A.R.LWAG..LVRAPS..VSSG.LQLEELFA..GAMRSF.E.L.KPRFQA.S.VQGPELA...QRLR.KE | |
Retrocopy | AFRYLWAGRTLVRAPSHSVSSGSLQLEELFANSGAMRSFFECLVKPRFQALSQVQGPELAIVAQRLRKKE |
Parental | RELQETEQLLEDENEDIRKLAENEIISCQKELTKLKQKIILLLIPSEETDENDLILELTAGVGGQEAMLF |
...QETE.LLEDENEDIRKL.E.EIIS..KEL.KLKQKIILLLIPSEE..END.ILELTAGVGGQEAML. | |
Retrocopy | QKPQETEHLLEDENEDIRKLIESEIISYKKELIKLKQKIILLLIPSEEIHENDFILELTAGVGGQEAMLC |
Parental | TSEMFDMYQRYATYK-KWH-FE-VLEYFPSEIGGLRHASASIGGSEVYRHMKFEGGVHRVQRVPKTEKQG |
T.EMFDMYQ.YATYK.KWH.FE..LEYFPSEI.G..HASASIGG...YR.M.FEG.VHRVQ.VPKTEKQ. | |
Retrocopy | TAEMFDMYQQYATYK<KWH<FE<ILEYFPSEIDGPKHASASIGGPKAYRKMEFEGSVHRVQQVPKTEKQV |
Parental | RMHTSTMTVAVLPQPSEINLVISPKDLRIETKRASGAGGQHVNTTDSAVRIVHLPT |
.MH.S.MT.AVL..P.EI.L.I.PK.L.IETK.AS.AG....NTTDSAVRI.HLPT | |
Retrocopy | HMHNSIMTTAVLS*PPEISLIINPKSL*IETK*ASRAG----NTTDSAVRITHLPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012787 | 1 retrocopy | |
Homo sapiens | ENSG00000112031 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017997 | 1 retrocopy |
retro_shar_129 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000009980 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000003131 | 2 retrocopies |