RetrogeneDB ID: | retro_shar_648 | ||
Retrocopy location | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
| Coordinates: | GL856919.1:4031877..4032257(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RALB | ||
| Ensembl ID: | ENSSHAG00000012747 | ||
| Aliases: | None | ||
| Description: | v-ral simian leukemia viral oncogene homolog B [Source:HGNC Symbol;Acc:9840] |
Retrocopy-Parental alignment summary:
>retro_shar_648
TACTTCTGTAGTGGGGAGGGGTTTCTCTTAGTTTTCTCCATAACAGAACATGAATCCTTTACAGCCACAGCAGAATTCAG
GGAACAGATTCTGTGTGTTAAGGCTGAAGAAGATAAAATCCCTTTGCATGTGGTTGGAAACAAATCCGACTTGCAAGAGA
GGAGACAGGTACCCATTGAAGAAGCCAGAAGTAAAGCAGAGGAATGGGGTGTCCAGTATGTAGAGACATCTGCCAAAACT
AGAGCCAATGTAGACAAAGTATTTTTTGATTAAATGAGAGAAATAAGAGCAAAGAAGATGTCAAAAAACAAAGATAAGAA
TGGTAAAAAAAAAAAAAAAGCAGCAAGAACAAGAAAAGCTTTAAAGAAAGATGCTGTTTA
ORF - retro_shar_648 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 85.16 % |
| Parental protein coverage: | 59.33 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | YFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPIEEARSKAEEWG |
| YF.SGEGFLLVFSITEHESFTATAEFREQIL.VKAEEDKIPL.VVGNKSDL.ERRQVPIEEARSKAEEWG | |
| Retrocopy | YFCSGEGFLLVFSITEHESFTATAEFREQILCVKAEEDKIPLHVVGNKSDLQERRQVPIEEARSKAEEWG |
| Parental | VQYVETSAKTRANVDKVFFDLMREIRAKKMSENKDKNG---KKSSKNKKSFK-ERCCL |
| VQYVETSAKTRANVDKVFFD.MREIRAKKMS.NKDKNG..........K..K.ERCCL | |
| Retrocopy | VQYVETSAKTRANVDKVFFD*MREIRAKKMSKNKDKNGXXXXXAARTRKALK<ERCCL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_648 was not experimentally validated.
Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gorilla gorilla | ENSGGOG00000001648 | 1 retrocopy | |
| Sarcophilus harrisii | ENSSHAG00000011497 | 1 retrocopy | |
| Sarcophilus harrisii | ENSSHAG00000012747 | 1 retrocopy |
retro_shar_648 ,
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