>retro_slyc_27
ATGGGATCATTGGTTGATAGTTTTGCTTTGCATAATTTGAACAAGAAAATCGTGATGGGTGACAATGGTTATGTTTTTGA
AGACGTTCCTCATTTGTCTGATTACATTCCTAGTCTTCCTACGTATCCTAATCCATTGAAGAAAAATCCTTCCTATTCAG
TCGTCAATCAGTATTTTGTCGATGAAGATGATACAGTTGCTCAAAATATTGTTGTCCGCAAGAACAGTCCAAGAGGGATA
CATTTTCGTCGAGCTGGTCCTTCCCAAGACGTTTATTTTAAGGCGGATGATGTTAATGCATGTATTGTAACATGTGGAGG
TTTATGCCCTGGTCTCAATACAGTTATCAGGGAAATAGTATGTGGCTTGTACTCTATGTATGGTGTAGCAAGAGTCATGG
GGATAGATGGAGGATATCGAGGTTTCTATTCCAAAAACACGATTCCATTGACACCTAACGTTGTGAATGATATCCATAAA
CGTGGTGGAACGATTCTTGGGTCATCTCGAGGAGGTCATGTTACTAAGAAGATAGTAGATAGCATTCAGGATCGAGGAAT
TAATCAGGTTTATATAATTGGAGGAGATGGAACGCTTAAAGGAGCATCGTTGATATTTGAGGAAATTACGAGGCGTGGTC
TAAATGTTGTAGTTGTTGGAATCCCCAAGACAATAGATAACGATATACCAGTTATTGACAAGTCTTTTGGTTTTGATTCT
GCGGTTGAGGAAGCTCAACGTGCTATTAGTGCTGCTCATGTTGAAGCTACGAGTTTTGAGAATGGAATTGGGGTTGTGAA
GTTAATGGGACGGGATAGTGGGTTTATAGCAATGTATGCTAGTCTTGCTAGTCGAGATGTTGATTGTTGTTTGATTCCAG
AATCCTGTTTCTATCTTGAAGGACGCGGTGGACTGTTTGAGTATATCGAACAAAGGCTGAAAGAGAATGGACACATGGTT
ATCGTTGTAGCTGAAGGTGTTGGACAAGATGATGAGCAAGTTGATGTTGGTTTATGGATATCGACAAGGATAAAGGAGCA
TTTTTCGAAAGAAAAGAAGATGATGATCAATCTGAAGTATATAGATCCAACATACATGATTCGGGCTATTGCAAGTAATG
CATCTGATAATATGTATTGCACTCATCTTGCTCAAAGCGCGGTACATGGAGCAATGGCTGGGTACACAGGCTTTACGGTT
GGTCCTGTCAACAACACACATGCTTACATACCCTTTGATAGAATCACTGAGAAACAAAACAAGGTTGACATTACAGACAT
GATGTGGGCACAACTTCTATCTTCAACTAATCAACCTAGCTTCTTGTCAACAGCGAGATCAGCTGATAATATTGAAGCAA
ACAAGGACGAAGAACCACCTATTCAATTATCAGATGAAGAAACAAATCAACTTAGCTTCTTGACAACCAGAGTCGATATA
AATGAAGCAAACAAGAACAAAGAACCACCTACTGAATTATCAGATGGAGAAACAAATTAA
ORF - retro_slyc_27 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
87.34 % |
Parental protein coverage: |
64.49 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | KKIVIGDDGYVLEDVPHLSDYIPNLPTYTNPLQHNPSYSVVKQYFVNEDDTVAEKVVVHKNSPRGIHFRR |
| KKIV.GD.GYV.EDVPHLSDYIP.LPTY.NPL..NPSYSVV.QYFV.EDDTVA...VV.KNSPRGIHFRR |
Retrocopy | KKIVMGDNGYVFEDVPHLSDYIPSLPTYPNPLKKNPSYSVVNQYFVDEDDTVAQNIVVRKNSPRGIHFRR |
|
Parental | AGPCQKVYFEPDDVYACIVTCGGLCPGLNTVIREIVCGLHYMYGVSRVMGIDGGYRGFYSKNTIPLTPKV |
| AGP.Q.VYF..DDV.ACIVTCGGLCPGLNTVIREIVCGL..MYGV.RVMGIDGGYRGFYSKNTIPLTP.V |
Retrocopy | AGPSQDVYFKADDVNACIVTCGGLCPGLNTVIREIVCGLYSMYGVARVMGIDGGYRGFYSKNTIPLTPNV |
|
Parental | VNNIHKRGGTILGTSRGGHVTKKIVDSIQDRGINQVYIIGGDGTQRGAAVIFEEIRRRGLNVAVAGIPKT |
| VN.IHKRGGTILG.SRGGHVTKKIVDSIQDRGINQVYIIGGDGT..GA..IFEEI.RRGLNV.V.GIPKT |
Retrocopy | VNDIHKRGGTILGSSRGGHVTKKIVDSIQDRGINQVYIIGGDGTLKGASLIFEEITRRGLNVVVVGIPKT |
|
Parental | IDNDIPVIDKSFGFDSAVEEAQRAISAAHVEATSFENGIGLVKLMGRDSGFIAMYATLASRDVDCCLIPE |
| IDNDIPVIDKSFGFDSAVEEAQRAISAAHVEATSFENGIG.VKLMGRDSGFIAMYA.LASRDVDCCLIPE |
Retrocopy | IDNDIPVIDKSFGFDSAVEEAQRAISAAHVEATSFENGIGVVKLMGRDSGFIAMYASLASRDVDCCLIPE |
|
Parental | SPFYLEGSGGLFEYIEHRLKDNGHMVIVIAEGAGQE |
| S.FYLEG.GGLFEYIE.RLK.NGHMVIV.AEG.GQ. |
Retrocopy | SCFYLEGRGGLFEYIEQRLKENGHMVIVVAEGVGQD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_27 was not experimentally validated.
Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.