RetrogeneDB ID: | retro_sscr_407 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 14:21197455..21197914(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000009710 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NHP2 | ||
Ensembl ID: | ENSSSCG00000014032 | ||
Aliases: | None | ||
Description: | NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:14377] |
Percent Identity: | 85.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MTKIKADPDGPEAQADACCGERTYHELLV-NLNPIAQPLASRKLTRKLYKCIIAAVKQKQIRRGVKEVQK |
MTKIKADP..PEAQ..ACCGE..YHELLV.NLNP...PLASR.LT.KLYKCI..A.KQKQI.RGVKEVQK | |
Retrocopy | MTKIKADPNRPEAQTEACCGEHAYHELLV>NLNPTVHPLASRRLTGKLYKCIKKAIKQKQIQRGVKEVQK |
Parental | FINKGEKGIMVLAGDTLPVEVYCHLPVMCEDRNLPYVYIPSKT-DLGAAAGSKRPTCVIMVKPHEEYQEA |
FINKGEKGIMVLAGDTL.VEVYCHLPVMCED.NLPY.YIPSKT..LGAAAGSKRPTCVIMVK.H.EYQEA | |
Retrocopy | FINKGEKGIMVLAGDTLLVEVYCHLPVMCEDQNLPYIYIPSKT<NLGAAAGSKRPTCVIMVKSHKEYQEA |
Parental | YDECLEEVQALPPPM |
YDECLEEVQALPPPM | |
Retrocopy | YDECLEEVQALPPPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 3 .72 RPM |
SRP014902_testis | 0 .00 RPM | 8 .20 RPM |
SRP018288_heart | 0 .03 RPM | 7 .28 RPM |
SRP018288_kidney | 0 .00 RPM | 7 .98 RPM |
SRP018288_liver | 0 .16 RPM | 11 .51 RPM |
SRP018288_lung | 0 .00 RPM | 4 .99 RPM |
SRP018856_adipose | 0 .00 RPM | 5 .82 RPM |
SRP035408_brain | 0 .13 RPM | 9 .85 RPM |
SRP035408_liver | 0 .12 RPM | 9 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012244 | 1 retrocopy | |
Homo sapiens | ENSG00000145912 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000000015 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003839 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018757 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004231 | 1 retrocopy | |
Mus musculus | ENSMUSG00000001056 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016057 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007907 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000016105 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000004247 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000014032 | 1 retrocopy |
retro_sscr_407 ,
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