RetrogeneDB ID: | retro_sscr_999 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 8:75131684..75132053(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000016893 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.19 % |
Parental protein coverage: | 94.03 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | FPNIKIEIYMDITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTAD |
F..I...IY.....L.G..EEHIK.RK.R.FVP..NNM.SG.NNTKKWKMEF.T.ER.ENPLMG.S..AD | |
Retrocopy | FSRISSKIYRILLLLAGILEEHIKSRKARLFVPVHNNMPSGINNTKKWKMEFGTQERRENPLMGDS*AAD |
Parental | PLSNLVLTFSTK-EDAVAFAE-KNGWSFDVEERKVPKPKSKSYGANFSWNKRTRVSTK |
PLSN.VLTFS.K.EDAVAFAE..NGWS......K.PK.K..S.GANFSWNKRTRVSTK | |
Retrocopy | PLSNMVLTFSNK<EDAVAFAE>QNGWS*GRKVPK-PKSK--S*GANFSWNKRTRVSTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 6 .37 RPM |
SRP014902_testis | 0 .00 RPM | 20 .93 RPM |
SRP018288_heart | 0 .00 RPM | 104 .41 RPM |
SRP018288_kidney | 0 .00 RPM | 51 .62 RPM |
SRP018288_liver | 0 .00 RPM | 32 .46 RPM |
SRP018288_lung | 0 .00 RPM | 6 .72 RPM |
SRP018856_adipose | 0 .00 RPM | 21 .17 RPM |
SRP035408_brain | 0 .00 RPM | 62 .82 RPM |
SRP035408_liver | 0 .00 RPM | 68 .75 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005452 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015851 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000001362 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015138 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019465 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021764 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000013784 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000013496 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015455 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016893 | 1 retrocopy |
retro_sscr_999 ,
|
Tupaia belangeri | ENSTBEG00000004605 | 1 retrocopy |