RetrogeneDB ID: | retro_stub_103 | ||
Retrocopylocation | Organism: | Potato (Solanum tuberosum) | |
Coordinates: | 2:46235070..46235418(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | PGSC0003DMG400013510 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.76 % |
Parental protein coverage: | 52.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GYAIGTLKEHRPYIDQIRIKYFQQIHESYGFDFYDFPGGEVQIEPILNVKDDADFGIMMKLANRAIQEYN |
GYAIGTLKEHRP..DQIR..Y.QQI..SYGFDFYD.PGGEV.IEPILNVK.DADFGIMMK.ANRAIQ..N | |
Retrocopy | GYAIGTLKEHRPLVDQIRKRYGQQIRKSYGFDFYDYPGGEVLIEPILNVKEDADFGIMMKFANRAIQKHN |
Parental | EKELNVF-KYKVLKIEKANCMIGGYEQ-YFMTVKVLNLTIGTSIET |
EKE.NVF.KYKVLKIEKAN.MIGGYEQ.YFM.VKVLNLT.GT.IET | |
Retrocopy | EKEHNVF*KYKVLKIEKANVMIGGYEQSYFMIVKVLNLTLGTCIET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Solanum tuberosum | PGSC0003DMG400013510 | 1 retrocopy |
retro_stub_103 ,
|
Solanum tuberosum | PGSC0003DMG400028064 | 1 retrocopy |