RetrogeneDB - Browse organism: Potato, Solanum tuberosum

Common name:	Potato
Latin name:	Solanum tuberosum
Genome assembly:	3.0
All retrocopies:	130
Parental genes:	105

Summary:	Number of retrocopies :
Conserved ORF:	76 ORF	54 ORF

#	RetrogeneDB ID	Identity	Coverage	ORF conservation
1.	retro_stub_1	64.94 %	100.00 %	ORF
2.	retro_stub_2	90.87 %	73.55 %	ORF
3.	retro_stub_3	96.98 %	96.60 %	ORF
4.	retro_stub_4	57.75 %	59.44 %	ORF
5.	retro_stub_5	88.03 %	68.52 %	ORF
6.	retro_stub_6	91.37 %	98.08 %	ORF
7.	retro_stub_7	64.55 %	98.44 %	ORF
8.	retro_stub_8	93.75 %	100.00 %	ORF
9.	retro_stub_9	66.26 %	100.00 %	ORF
10.	retro_stub_10	63.20 %	90.58 %	ORF
11.	retro_stub_11	81.92 %	71.82 %	ORF
12.	retro_stub_12	83.16 %	80.90 %	ORF
13.	retro_stub_13	85.42 %	100.00 %	ORF
14.	retro_stub_14	73.33 %	86.31 %	ORF
15.	retro_stub_15	72.07 %	97.27 %	ORF
16.	retro_stub_16	92.31 %	82.89 %	ORF
17.	retro_stub_17	95.38 %	67.05 %	ORF
18.	retro_stub_18	80.25 %	88.52 %	ORF
19.	retro_stub_19	79.92 %	58.30 %	ORF
20.	retro_stub_20	60.96 %	56.61 %	ORF
21.	retro_stub_21	97.73 %	100.00 %	ORF
22.	retro_stub_22	56.86 %	92.73 %	ORF
23.	retro_stub_23	88.64 %	96.10 %	ORF
24.	retro_stub_24	97.48 %	100.00 %	ORF
25.	retro_stub_25	77.09 %	98.31 %	ORF
26.	retro_stub_26	86.67 %	77.92 %	ORF
27.	retro_stub_27	52.31 %	54.43 %	ORF
28.	retro_stub_28	96.77 %	54.39 %	ORF
29.	retro_stub_29	78.54 %	99.54 %	ORF
30.	retro_stub_30	85.29 %	79.69 %	ORF
31.	retro_stub_31	70.24 %	99.73 %	ORF
32.	retro_stub_32	52.67 %	76.97 %	ORF
33.	retro_stub_33	84.23 %	73.71 %	ORF
34.	retro_stub_34	88.71 %	69.44 %	ORF
35.	retro_stub_35	72.09 %	64.18 %	ORF
36.	retro_stub_36	89.67 %	79.22 %	ORF
37.	retro_stub_37	64.69 %	99.02 %	ORF
38.	retro_stub_38	97.67 %	91.49 %	ORF
39.	retro_stub_39	53.31 %	77.28 %	ORF
40.	retro_stub_40	92.57 %	56.78 %	ORF
41.	retro_stub_41	85.87 %	72.44 %	ORF
42.	retro_stub_42	92.91 %	68.45 %	ORF
43.	retro_stub_43	94.34 %	92.98 %	ORF
44.	retro_stub_44	73.18 %	98.64 %	ORF
45.	retro_stub_45	67.65 %	82.61 %	ORF
46.	retro_stub_46	94.97 %	100.00 %	ORF
47.	retro_stub_47	79.35 %	81.40 %	ORF
48.	retro_stub_48	86.75 %	62.90 %	ORF
49.	retro_stub_49	88.48 %	100.00 %	ORF
50.	retro_stub_50	100.00 %	100.00 %	ORF
51.	retro_stub_51	80.53 %	100.00 %	ORF
52.	retro_stub_52	76.92 %	82.80 %	ORF
53.	retro_stub_53	93.75 %	74.53 %	ORF
54.	retro_stub_54	73.48 %	96.00 %	ORF
55.	retro_stub_55	84.34 %	98.81 %	ORF
56.	retro_stub_56	81.12 %	98.52 %	ORF
57.	retro_stub_57	80.80 %	100.00 %	ORF
58.	retro_stub_58	63.00 %	100.00 %	ORF
59.	retro_stub_59	81.52 %	91.06 %	ORF
60.	retro_stub_60	98.86 %	100.00 %	ORF
61.	retro_stub_61	51.20 %	97.06 %	ORF
62.	retro_stub_62	60.38 %	66.25 %	ORF
63.	retro_stub_63	77.57 %	60.72 %	ORF
64.	retro_stub_64	69.88 %	60.72 %	ORF
65.	retro_stub_65	67.82 %	70.49 %	ORF
66.	retro_stub_66	56.60 %	66.25 %	ORF
67.	retro_stub_67	58.49 %	66.25 %	ORF
68.	retro_stub_69	82.14 %	53.49 %	ORF
69.	retro_stub_71	63.10 %	83.51 %	ORF
70.	retro_stub_73	56.60 %	66.25 %	ORF
71.	retro_stub_74	81.75 %	70.79 %	ORF
72.	retro_stub_75	60.73 %	51.15 %	ORF
73.	retro_stub_76	55.23 %	52.97 %	ORF
74.	retro_stub_77	56.60 %	66.25 %	ORF
75.	retro_stub_78	91.34 %	59.39 %	ORF
76.	retro_stub_79	58.59 %	94.17 %	ORF
77.	retro_stub_80	82.65 %	64.24 %	ORF
78.	retro_stub_81	79.08 %	79.88 %	ORF
79.	retro_stub_83	88.04 %	100.00 %	ORF
80.	retro_stub_84	94.76 %	59.32 %	ORF
81.	retro_stub_85	95.12 %	68.33 %	ORF
82.	retro_stub_86	76.36 %	70.97 %	ORF
83.	retro_stub_87	83.61 %	87.14 %	ORF
84.	retro_stub_88	88.28 %	100.00 %	ORF
85.	retro_stub_89	64.08 %	79.23 %	ORF
86.	retro_stub_90	84.29 %	59.71 %	ORF
87.	retro_stub_92	54.84 %	64.24 %	ORF
88.	retro_stub_93	78.62 %	61.48 %	ORF
89.	retro_stub_94	84.08 %	63.09 %	ORF
90.	retro_stub_95	83.00 %	65.79 %	ORF
91.	retro_stub_96	60.93 %	61.97 %	ORF
92.	retro_stub_97	70.00 %	52.63 %	ORF
93.	retro_stub_98	59.28 %	100.00 %	ORF
94.	retro_stub_101	54.79 %	82.57 %	ORF
95.	retro_stub_102	63.25 %	70.75 %	ORF
96.	retro_stub_103	82.76 %	52.78 %	ORF
97.	retro_stub_104	69.92 %	99.18 %	ORF
98.	retro_stub_105	73.53 %	81.30 %	ORF
99.	retro_stub_106	51.13 %	54.70 %	ORF
100.	retro_stub_108	71.31 %	98.36 %	ORF
101.	retro_stub_110	64.00 %	73.08 %	ORF
102.	retro_stub_111	78.26 %	97.18 %	ORF
103.	retro_stub_112	79.71 %	97.18 %	ORF
104.	retro_stub_114	85.90 %	60.94 %	ORF
105.	retro_stub_116	87.69 %	100.00 %	ORF
106.	retro_stub_117	90.11 %	75.00 %	ORF
107.	retro_stub_118	51.72 %	52.83 %	ORF
108.	retro_stub_120	84.21 %	100.00 %	ORF
109.	retro_stub_121	58.39 %	51.72 %	ORF
110.	retro_stub_122	67.18 %	60.72 %	ORF
111.	retro_stub_123	68.54 %	63.57 %	ORF
112.	retro_stub_124	83.72 %	89.47 %	ORF
113.	retro_stub_126	68.85 %	52.63 %	ORF
114.	retro_stub_127	92.59 %	61.36 %	ORF
115.	retro_stub_129	90.91 %	59.39 %	ORF
116.	retro_stub_133	65.43 %	82.98 %	ORF
117.	retro_stub_134	66.50 %	80.25 %	ORF
118.	retro_stub_135	70.93 %	78.60 %	ORF
119.	retro_stub_137	82.29 %	100.00 %	ORF
120.	retro_stub_138	92.63 %	100.00 %	ORF
121.	retro_stub_139	56.16 %	85.50 %	ORF
122.	retro_stub_140	89.47 %	100.00 %	ORF
123.	retro_stub_143	73.33 %	71.11 %	ORF
124.	retro_stub_144	51.42 %	92.90 %	ORF
125.	retro_stub_147	84.81 %	88.76 %	ORF
126.	retro_stub_148	88.64 %	98.88 %	ORF
127.	retro_stub_151	55.56 %	72.22 %	ORF
128.	retro_stub_153	57.58 %	56.94 %	ORF
129.	retro_stub_155	56.60 %	66.25 %	ORF
130.	retro_stub_156	53.78 %	61.26 %	ORF

#	Ensembl ID	Symbol	Description
1.	PGSC0003DMG400041032		Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400041032]
2.	PGSC0003DMG400026015		VAP27 [Source:PGSC_GENE;Acc:PGSC0003DMG400026015]
3.	PGSC0003DMG401028933		Ribosomal protein S27 [Source:PGSC_GENE;Acc:PGSC0003DMG401028933]
4.	PGSC0003DMG400000965		Ribosomal protein S10, eukaryotic and archaeal form [Source:PGSC_GENE;Acc:PGSC0003DMG400000965]
5.	PGSC0003DMG400044937		Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400044937]
6.	PGSC0003DMG400031773		Transcription elongation factor 1 homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400031773]
7.	PGSC0003DMG400017151		60S ribosomal protein L17 [Source:PGSC_GENE;Acc:PGSC0003DMG400017151]
8.	PGSC0003DMG400007914		Calcium lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007914]
9.	PGSC0003DMG400020566		Ribosomal protein S26 [Source:PGSC_GENE;Acc:PGSC0003DMG400020566]
10.	PGSC0003DMG400021238		Gpi-anchor transamidase [Source:PGSC_GENE;Acc:PGSC0003DMG400021238]
11.	PGSC0003DMG400014862		Subtilisin-like protease [Source:PGSC_GENE;Acc:PGSC0003DMG400014862]
12.	PGSC0003DMG400005011		Crooked neck protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005011]
13.	PGSC0003DMG400016487		Tobamovirus multiplication 1 homolog 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400016487]
14.	PGSC0003DMG400020165		DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Source:PGSC_GENE;Acc:PGSC0003DMG400020165]
15.	PGSC0003DMG400025528		NTGP4 [Source:PGSC_GENE;Acc:PGSC0003DMG400025528]
16.	PGSC0003DMG400011771		Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400011771]
17.	PGSC0003DMG400021202		Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021202]
18.	PGSC0003DMG401005911		40S ribosomal protein S11 [Source:PGSC_GENE;Acc:PGSC0003DMG401005911]
19.	PGSC0003DMG400003291		40S ribosomal protein S20 [Source:PGSC_GENE;Acc:PGSC0003DMG400003291]
20.	PGSC0003DMG400026532		Deacetylase [Source:PGSC_GENE;Acc:PGSC0003DMG400026532]
21.	PGSC0003DMG401028122		Small nuclear ribonucleoprotein f [Source:PGSC_GENE;Acc:PGSC0003DMG401028122]
22.	PGSC0003DMG400002183		Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002183]
23.	PGSC0003DMG400015434		Mannose-P-dolichol utilization defect 1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015434]
24.	PGSC0003DMG400013384		Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013384]
25.	PGSC0003DMG402024649		EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG402024649]
26.	PGSC0003DMG400025301		Splicing factor 3B subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400025301]
27.	PGSC0003DMG400014503		Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400014503]
28.	PGSC0003DMG400003769		Histone H3.3 [Source:PGSC_GENE;Acc:PGSC0003DMG400003769]
29.	PGSC0003DMG400028064		Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028064]
30.	PGSC0003DMG401014290		Pre-mRNA cleavage factor im, 25kD subunit [Source:PGSC_GENE;Acc:PGSC0003DMG401014290]
31.	PGSC0003DMG400028744		Small molecular heat shock protein 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400028744]
32.	PGSC0003DMG402000458	CKS2	Cyclin-dependent kinases regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG402000458]
33.	PGSC0003DMG400013510		Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013510]
34.	PGSC0003DMG400013285		Inositol monophosphatase 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400013285]
35.	PGSC0003DMG401027186		Plastidic phosphate translocator2 [Source:PGSC_GENE;Acc:PGSC0003DMG401027186]
36.	PGSC0003DMG402027186		Ribosomal protein L33 [Source:PGSC_GENE;Acc:PGSC0003DMG402027186]
37.	PGSC0003DMG400007336		40S ribosomal protein S15 [Source:PGSC_GENE;Acc:PGSC0003DMG400007336]
38.	PGSC0003DMG400031258		60S ribosomal protein L34 [Source:PGSC_GENE;Acc:PGSC0003DMG400031258]
39.	PGSC0003DMG400008674		RNA polymerase II transcriptional coactivator KIWI [Source:PGSC_GENE;Acc:PGSC0003DMG400008674]
40.	PGSC0003DMG400026130		60S ribosomal protein L18a [Source:PGSC_GENE;Acc:PGSC0003DMG400026130]
41.	PGSC0003DMG400029753		GTP-binding nuclear protein Ran2 [Source:PGSC_GENE;Acc:PGSC0003DMG400029753]
42.	PGSC0003DMG400006066		Auxin-induced protein 5NG4 [Source:PGSC_GENE;Acc:PGSC0003DMG400006066]
43.	PGSC0003DMG400012238		Ubiquitin fusion protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012238]
44.	PGSC0003DMG400011024		Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011024]
45.	PGSC0003DMG400016534		60S ribosomal protein L37-3 [Source:PGSC_GENE;Acc:PGSC0003DMG400016534]
46.	PGSC0003DMG401030679		Plant synaptotagmin [Source:PGSC_GENE;Acc:PGSC0003DMG401030679]
47.	PGSC0003DMG401023527		Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG401023527]
48.	PGSC0003DMG400029857		Strictosidine synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400029857]
49.	PGSC0003DMG402015759		60S ribosomal protein L13a [Source:PGSC_GENE;Acc:PGSC0003DMG402015759]
50.	PGSC0003DMG400010157		Forever young oxidoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG400010157]
51.	PGSC0003DMG400010156		Small nuclear ribonucleoprotein polypeptide [Source:PGSC_GENE;Acc:PGSC0003DMG400010156]
52.	PGSC0003DMG400021536		Heat shock protein 70 (HSP70)-interacting protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021536]
53.	PGSC0003DMG400012453		Nucleolar GTP-binding protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400012453]
54.	PGSC0003DMG400024278		Phenylacetaldehyde synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400024278]
55.	PGSC0003DMG400000577		Band 7 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000577]
56.	PGSC0003DMG400001375		UDP-glucose:protein transglucosylase SlUPTG1 [Source:PGSC_GENE;Acc:PGSC0003DMG400001375]
57.	PGSC0003DMG400026715		Pre-mRNA-splicing factor syf2 [Source:PGSC_GENE;Acc:PGSC0003DMG400026715]
58.	PGSC0003DMG400008853		Small GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008853]
59.	PGSC0003DMG400025495		Glucose-6-phosphate/phosphate translocator 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400025495]
60.	PGSC0003DMG400014472		Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014472]
61.	PGSC0003DMG400017413		Phosphofructokinase [Source:PGSC_GENE;Acc:PGSC0003DMG400017413]
62.	PGSC0003DMG400002541		Ribosomal protein L37 [Source:PGSC_GENE;Acc:PGSC0003DMG400002541]
63.	PGSC0003DMG400012332		Rad25/xp-B DNA repair helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400012332]
64.	PGSC0003DMG400001421		60S ribosomal protein L34 [Source:PGSC_GENE;Acc:PGSC0003DMG400001421]
65.	PGSC0003DMG400030873		Ribosomal protein L24 [Source:PGSC_GENE;Acc:PGSC0003DMG400030873]
66.	PGSC0003DMG400037204		WD-40 repeat family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400037204]
67.	PGSC0003DMG400012286		Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012286]
68.	PGSC0003DMG400001440		Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400001440]
69.	PGSC0003DMG400019258		Translational initiation factor eIF1 [Source:PGSC_GENE;Acc:PGSC0003DMG400019258]
70.	PGSC0003DMG400019920		Protein kinase atmrk1 [Source:PGSC_GENE;Acc:PGSC0003DMG400019920]
71.	PGSC0003DMG400027379		ACI13 [Source:PGSC_GENE;Acc:PGSC0003DMG400027379]
72.	PGSC0003DMG400027984		Transcription initiation factor IIF subunit beta [Source:PGSC_GENE;Acc:PGSC0003DMG400027984]
73.	PGSC0003DMG400030868		60S ribosomal protein L13 [Source:PGSC_GENE;Acc:PGSC0003DMG400030868]
74.	PGSC0003DMG400025305		Ribosomal protein S26 [Source:PGSC_GENE;Acc:PGSC0003DMG400025305]
75.	PGSC0003DMG400004771		Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Source:PGSC_GENE;Acc:PGSC0003DMG400004771]
76.	PGSC0003DMG400028781		40S ribosomal protein S7 [Source:PGSC_GENE;Acc:PGSC0003DMG400028781]
77.	PGSC0003DMG400029389		Serine hydroxymethyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400029389]
78.	PGSC0003DMG400004872		Myo-inositol oxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400004872]
79.	PGSC0003DMG400025377		4,5-DOPA dioxygenase extradiol [Source:PGSC_GENE;Acc:PGSC0003DMG400025377]
80.	PGSC0003DMG400024969		Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024969]
81.	PGSC0003DMG400015000		Endonuclease [Source:PGSC_GENE;Acc:PGSC0003DMG400015000]
82.	PGSC0003DMG400018466		Mak [Source:PGSC_GENE;Acc:PGSC0003DMG400018466]
83.	PGSC0003DMG400029951		Nut2 [Source:PGSC_GENE;Acc:PGSC0003DMG400029951]
84.	PGSC0003DMG400029083		Potassium channel NKT1 [Source:PGSC_GENE;Acc:PGSC0003DMG400029083]
85.	PGSC0003DMG400028548		Hydrolase, alpha/beta fold family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028548]
86.	PGSC0003DMG400003635		Putative calcium-dependent protein kinase CPK1 adapter protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400003635]
87.	PGSC0003DMG400007545		Lipase class 3 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007545]
88.	PGSC0003DMG400013127		Protein synthesis initiation factor [Source:PGSC_GENE;Acc:PGSC0003DMG400013127]
89.	PGSC0003DMG400030909		Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030909]
90.	PGSC0003DMG402025960		Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402025960]
91.	PGSC0003DMG400005907		DNA-directed RNA polymerase II [Source:PGSC_GENE;Acc:PGSC0003DMG400005907]
92.	PGSC0003DMG400031020		Allyl alcohol dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400031020]
93.	PGSC0003DMG400022250		WD-40 repeat family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022250]
94.	PGSC0003DMG400010119		Fibrillarin homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400010119]
95.	PGSC0003DMG400008888	UPP	Uracil phosphoribosyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400008888]
96.	PGSC0003DMG400002052		Transcription initiation factor iia (Tfiia), gamma chain [Source:PGSC_GENE;Acc:PGSC0003DMG400002052]
97.	PGSC0003DMG400020480		Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020480]
98.	PGSC0003DMG400015423		Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015423]
99.	PGSC0003DMG400026509		Reticulon B22 [Source:PGSC_GENE;Acc:PGSC0003DMG400026509]
100.	PGSC0003DMG400013151		PCI domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013151]
101.	PGSC0003DMG400015327		UDP-glucose:glucosyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400015327]
102.	PGSC0003DMG401008881		Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG401008881]
103.	PGSC0003DMG400037766		Gag-pol protein [Source:PGSC_GENE;Acc:PGSC0003DMG400037766]
104.	PGSC0003DMG400029922		Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029922]
105.	PGSC0003DMG400022267		Calcineurin B [Source:PGSC_GENE;Acc:PGSC0003DMG400022267]

Retrogenes	FASTA	BED	TSV (download all or selected columns from MySQL table)
Parental genes	FASTA	BED	TSV (download all or selected columns from MySQL table)