>retro_stub_93
CGGAATGCGACAGCCAAACATGTACTGCTAATGGAGATTGGGTCCGATGGTATTGCTAGAGAATCACCGATCATTGCTTA
CACCGAGAAGATAATTGAGGCAGAGCAGATTCAATTAAGAAAATATATAGATGAAAATTACTCCAAGATTCGTGATGTTG
AGAAGGAATTGGCAAACCTGTCAATGGAGATGAAACTTACAGCTGGGCCTAAGAAAGCAGCACTTGAACACATGAGAAAG
AAAATAGAAATGTCAACAGAGAAATCCGTATAGCTAAGCAGAAGAAAGAACAAGCACGAAAGGCAGCATTAAAAGTTGTT
AAGGATGAGGAGGATTTCAAGCAAAAGCTTTGTGAGGACTTGAATAATCTGGTTCGTGAAAGTAGCAACACTCAGCTAGC
TAGATTGGAGGAACTGAAAAGGAAGCTGGAAGCTTTAAATCTGAGCAGAGCATCCACATCCTCT
ORF - retro_stub_93 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.62 % |
Parental protein coverage: |
61.48 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | RNANPNHVMLPEIGPDGIARESPVIAYTEKIIEEEQLQLRKYIAENYSKIRDVEKEFANLSMEMKLTAGP |
| RNA...HV.L.EIG.DGIARESP.IAYTEKIIE.EQ.QLRKYI.ENYSKIRDVEKE.ANLSMEMKLTAGP |
Retrocopy | RNATAKHVLLMEIGSDGIARESPIIAYTEKIIEAEQIQLRKYIDENYSKIRDVEKELANLSMEMKLTAGP |
|
Parental | KKAALELMRQKIEMSTER-IRVAKLKEEQAQKAWEAASQAVKDEEAIKQKLCEDLNSLVLESSNSQLAKL |
| KKAALE.MR.KIEMSTE..IR.AK.K.EQA.KA...A...VKDEE..KQKLCEDLN.LV.ESSN.QLA.L |
Retrocopy | KKAALEHMRKKIEMSTEK<IRIAKQKKEQARKA---ALKVVKDEEDFKQKLCEDLNNLVRESSNTQLARL |
|
Parental | EELKRRLEALNPSRASTAS |
| EELKR.LEALN.SRAST.S |
Retrocopy | EELKRKLEALNLSRASTSS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum tuberosum was not studied using RNA-Seq expression data.
Solanum tuberosum was not studied using ChIP-Seq data.
Solanum tuberosum was not studied using EST data.
Solanum tuberosum was not studied using FANTOM5 data.
retro_stub_93 was not experimentally validated.
Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.