RetrogeneDB ID: retro_taes_104

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 2B:49846925..49847372(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_2BL_97DB34EF2
• Aliases: None
• Description: None

Sequence

>retro_taes_104
TGTGCCGCCAAGGAAACCGAACTGATCATCGAGAGGCTGGGCTGCGATCCCCGTCTTCTGGACCCGGAGGAATCCCCCCA
CGAGAGCACGCGGGTCCGGAAGCTCGCCTTGAGCTGCATGCAAGGTCCTCATCAGGATTGTTCTGATGCTGATCTTTTGG
TTCGGAAGGCTGCCCTGCTGGGCATCACGATTGAAGCTGGCTTGATGGCTCAGGACCTGAGGGACAAGTATTATGATTGC
AACAAGTCCTACACGAACAGATTGATCCGGGACTTTGCCCTGGAAGTTGTGACTCGAAAATTCGATGGATGTACTATTGC
TCCTTCTGCTCATGATGATTTTAGGTACAGTTTCGTCGCTAAACTTGAGGAAGATGCCGAGGAAAAGCGTCGCAGGGACG
ACCTTGTAGGTTCTGATGATCCAGCTTCCGAGAAGGCATCTGGGGTT

Alignment

ORF - retro_taes_104 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.47 %
• Parental protein coverage: 88.41 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  CVAKESELIVERLSCHPSLLDPEESPHESTQIRMFALSCMKGS-QACSDAALLVKKAALLGITIEAGLMT
          C.AKE.ELI.ERL.C.P.LLDPEESPHEST..R..ALSCM.G..Q.CSDA.LLV.KAALLGITIEAGLM.
Retrocopy CAAKETELIIERLGCDPRLLDPEESPHESTRVRKLALSCMQGPHQDCSDADLLVRKAALLGITIEAGLMA

Parental  RNLRDKYYDSNVSYLNRLIRRFALEVVRQKFDG-SLEHSAHDDYRYDFVARLEEDA-ENHCRDSLVNS-D
          ..LRDKYYD.N.SY.NRLIR.FALEVV..KFDG.....SAHDD.RY.FVA.LEEDA.E...RD.LV.S.D
Retrocopy QDLRDKYYDCNKSYTNRLIRDFALEVVTRKFDGCTIAPSAHDDFRYSFVAKLEEDAEEKRRRDDLVGSDD

Parental  PASEEKGNV
          PASE....V
Retrocopy PASEKASGV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_104 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_2BL_97DB34EF2	4 retrocopies	retro_taes_100, retro_taes_104 , retro_taes_109, retro_taes_113,