RetrogeneDB ID: retro_taes_106

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 2B:291952648..291953089(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_2DL_3B4943F11
• Aliases: None
• Description: None

Sequence

>retro_taes_106
ATTGTTGACTTGGGTTTGTGCGTGGTTTTCCTGTGTGTTGCAGTCGGGTACGGTTCCTACTTCGGGAAGAAGCTGGATCC
GGAGCCGGGGCGGTGCCGGCGGACGGACGGCAAGAAGTGGCGGTGCTCCAAGGAGGCCGCCCAGGACTCCAAGTACTGCG
AGCGCCACATGCACCGCGGCCGCAACCGTTCAAGAAAGCCTGTGGAAACGCAGCTCGTCGCCACGCCCCACCACTCCCAC
TCCCAGCAGCTGCAGCAGCACGCCCCCGCCGCCAGCGCCGCCGCGTTCCACAGCCACTCGCCGTATCCGGCGATCGCCTC
TGGCGGCGGCGGCTCCTTCGCCGTGGGATCTGCTCAGCTGCACATGGACAATGCTGCTTCGCCTTACGCGACCGCTGGTG
CCGCCGGAAACAAAGATTTCAGGTGATCTCCATTTACCTTC

Alignment

ORF - retro_taes_106 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.81 %
• Parental protein coverage: 51.23 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VLDL-LARLFVNCSVGYGSYFGKKLDPEPGRCRRTDGKKWRCSKEAAQDSKYCERHMHRGRNRSRKPVET
          ..DL.L...F....VGYGSYFGKKLDPEPGRCRRTDGKKWRCSKEAAQDSKYCERHMHRGRNRSRKPVET
Retrocopy IVDLGLCVVFLCVAVGYGSYFGKKLDPEPGRCRRTDGKKWRCSKEAAQDSKYCERHMHRGRNRSRKPVET

Parental  QLVATPHSHSHSQQLQQHAPAATAAAFHSHSPYPAIAT-GGGSFGLGSAQLHMDNAAAPYATAGAAGNKD
          QLVATPH.HSHSQQLQQHAPAA.AAAFHSHSPYPAIA..GGGSF..GSAQLHMDNAA.PYATAGAAGNKD
Retrocopy QLVATPH-HSHSQQLQQHAPAASAAAFHSHSPYPAIASGGGGSFAVGSAQLHMDNAASPYATAGAAGNKD

Parental  FRYSAYGF
          FR.S...F
Retrocopy FR*SPFTF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_106 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_2DL_3B4943F11	1 retrocopy	retro_taes_106 ,