RetrogeneDB ID: retro_taes_114

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 2D:133802790..133803104(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_6BS_763DBF311
• Aliases: None
• Description: None

Sequence

>retro_taes_114
GTCATCTAGATGCTTTTGCACGGTTTGGATTATGCTCCTTTCCTGCCGTCTAACGTCTTCTAAAGTGTTGATCACTTCAA
GAGAACCGGCAAGTATTGTAGGCCGACCATCACGGTTTCTAGTGTAAATTTGTAGCTTCCCTGGTGTCTGGCTTGGGGGC
AAGTTCCCAAGTCGTTTTATGAAGTCATGGATGGGTTTTTCATCAAGCGGGCATCTCAGGCTATCAAAACAGCGGGATTA
CAACAGAAGGATATTATTATTCAGTGCAATGGGAAATATGTTGTGACAGTTTGCAGTTGTTCAAAATATTGGCG

Alignment

ORF - retro_taes_114 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.78 %
• Parental protein coverage: 76.98 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VIGMLFHDLDCTPFMPSNIILKWWDHFKKTRMYCRPTMRVFGVNLHNAQSSPWVKVPTSLYESYDDGFLV
          VI.ML.H.LD..PF.PSN......DHFK.T..YCRPT..V..VNL.......W..VP.S.YE..D.GF..
Retrocopy VI*MLLHGLDYAPFLPSNVF*SV-DHFKRTGKYCRPTITVSSVNL*LPWCLAWGQVPKSFYEVMD-GFFI

Parental  ERVPRSVKSAGLQQKDLIITCNGKPVAT-SLQVHLCLA
          .R.....K.AGLQQKD.II.CNGK.V.T.SLQ....LA
Retrocopy KRASQAIKTAGLQQKDIIIQCNGKYVVT<SLQLFKILA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_114 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_6BS_763DBF311	1 retrocopy	retro_taes_114 ,