RetrogeneDB ID: | retro_taes_120 | ||
Retrocopy location | Organism: | Wheat (Triticum aestivum) | |
| Coordinates: | 3A:179988241..179990641(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | TRAES3BF035100020CFD_g | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_taes_120
GCAATCTCTGTGATCTTCCGCCTGCCTTGTGGCGAGCAGCTCATTCCAAACGCGCCTTACCTTGTGGATCGTGCTCTCGC
CATGGAGCAGGACCCAAGTGCACGGAGGAACGCGTTCCTCATGCTCTGCGACTGCTCGCCGGATCATGCGAACGCTTACT
TGCTCAGCAACGCTGCCCGCGACGCCGAGTGGCCCATCGCCCTCCAGATGGCCGCCCTCGATTTCGTTCGCAAAGCCTAC
TCTCCTCGCTTCAGAACCACGTACATTGAGATCATCATGTCCCTCATCTCCACTGGCACAACTGATGCTGTTGTAGTATA
TGACTGCGCACGCACGCTCTTGTCTGTCTCCCGTGCACCGACCTTGATCCGCGCTGCTGTGGAAGCCTACTTCCGGCTGC
TCAACTCACAAAGTGACAAGAAGGTGAGGCTTGTTATCCTGGACAGCCTGCACGAGCTGTGCACCTCACACCATTATATG
ATGGTCTCTTTTGTCATGGACATCCTGCACTTGCTTGCCAGAGCTGATGCTGATCAGCTGGATGTCAGAAGCAAGGCTCT
GGATTTGGTGCTTGGTTTGATCACCGCGCAGAATGTGGAGAAGGTCGTTTTATACCTCAAGAAGGAGGTTTTTGAGACAA
TGGACAGTGGGCATAAGATGGCCTATGAATACTACCTGATGCTGGTGCAGGCGATCCATGCCTGTGCCGTGCAGTACCCA
AGTGTGGCTGGATTGGTGATGCACATCCTCTTGGATTTCCTTGTGTATGCTGACATTCCTTCAGCTTCGGGTGTCATTAT
GTTTGTGTGTGACGTCATCGGGGCCGATCCTTTGCTGCGTGTTTCCGTGATAGTGAGGCTGGTTGACTTGTTAAGTTTTA
TCCAGGATTCCTTCATCTGTTCATGTGTTCTCTGGATCCTTGGGGAGTACTCGTTTTCGCTATCTGAGGTCCGGAGAGCC
ATTTCAACCATTTTGCAGACACTTGGAGATCAGCCCTTCAATGATGTCACCGAGAAAAGCGATGAATTCGATTCATCCAA
GACGGTCAATCCACTGAGGGGCTCATGTAATTTACGTTCTAAGAGACACATCGTTCTTTCAAATGACACTTATGCCACAC
AGACTGTCGTCACCGGTGAATCCATTTTTGATTGCGCTCCTACTAGTGGGTTGTTCGATTGCACGCATAGTCTCAGATTT
CTCATTATGTCAGGTGATTTTCACTAGGGCGCCGTTGTTGCGTGTACGTTGACCAAGCTTGTGCTGAGGCTGGAGGAGGT
TGAGCCATCTAATAAGGTTGAAGCAAACAAGGCATCAGCAGAGTCTTTCCTGATCATGGTGTCCATGATGCAGCTGGGGA
AGTCCTCTTACCTTCCCCACCCTATTGACAGTGACTCACATGACAGAATCGTGTTCTGTGTGAGGTTGCTTTGTAGCACT
GATTATGATCATGCGAGGAAGGTTTGGTTGCTGTCATGCCGCCAGAGCTTCACAAAGAAGCTTGCTGAGAAGCAGTCCAG
GAAGAATAATGAGAAGATGAAGGTCGAGGCACAGAATGCCCATGCACATCCTGATGATTCCATTGATTTCTACCACCTGA
GGAGCAGGAGGGGAATGGGCCAACTTGACTCGGAAGATGAGTTCCGAGATGATTTAAAGGCTGCAACTGGTGAACTCAAG
GATGCAGATGATGCAAATAATTTGAACCGCCCTATTCAATTGACAGGGTTAAGTGATCCATTGTATGTTGAAGGATTTGT
TACTGTTAATCAATATTATGATACTGTACTTGATATTACCTTCGTAAACCGGACAGAAGAAACAATGCACAACTTGTGTT
TGGAGTTTGCCACAGCATGTAGAAATGCAGTACTTGAGCGCTCTCCGAAGTACACTGTGGCTCCTAACGCAAGCGAGCAA
ATCCAGGCCAACATCAAGGTTTCTTCATCAAATGTTGGAATTATACTTACTCGCATCGTTTACGAGACTTCAGATGAAGT
GGGGCCTTCAGAGGTGATCTTAAAAGATATGAACATTAGCATTGCGGATTACGTGACACCTGCTACATGCACTGATATCG
CTTTCCGGAAGATGTGGACTGAGTGTCCCTGGAAAGTTAAGGTGAAGGTCAATACCGTGCTTCATGATGAGAAGGCATTT
GTGAACTTTATAATCAAGTCAACAAACATGAACTGTCTAACACCATCGTCTGCGCTTGATGGTGACTGTTGGTTTGTTGC
TGCCAATCTCTACGCCAAGAGTGTGTTTGGCGAGGATGCTTTGGTGAACATCAGCATAGAGAAGCAGTCCAACTCTAAGC
TCAGTGGCTACATCGCTATACGTGGCTATGTCCAAGGACTGGTTCTTAATTTGACGCATACACTTATCCTTAAACAGCAG
ORF - retro_taes_120 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 58.08 % |
| Parental protein coverage: | 83.58 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | AISAIYRLPQGDQLIPDAPELVERALASEQDASARRNAFVMLCLCGTERAVAYLLSNAERVMEWPDLLQM |
| AIS.I.RLP.G.QLIP.AP.LV.RALA.EQD.SARRNAF.MLC.C....A.AYLLSNA.R..EWP..LQM | |
| Retrocopy | AISVIFRLPCGEQLIPNAPYLVDRALAMEQDPSARRNAFLMLCDCSPDHANAYLLSNAARDAEWPIALQM |
| Parental | AAVDLIRKVCRPPNRADKGRYIKIIFSLRSSPST--AVLYECAGAIVSLSSAPTAVRAAAETYCQLLSSQ |
| AA.D..RK...P..R.....YI.II.SL.S...T...V.Y.CA....S.S.APT..RAA.E.Y..LL.SQ | |
| Retrocopy | AALDFVRKAYSPRFRTT---YIEIIMSLISTGTTDAVVVYDCARTLLSVSRAPTLIRAAVEAYFRLLNSQ |
| Parental | SDNNVRLILLDRLNELHTSHRDVMVDVVMDVLRALA---SPNLDVKRKVLDLVLDLLTPRNVEEVVLYLK |
| SD..VRL..LD.L.EL.TSH...MV..VMD.L..LA......LDV..K.LDLVL.L.T..NVE.VVLYLK | |
| Retrocopy | SDKKVRLVILDSLHELCTSHHYMMVSFVMDILHLLARADADQLDVRSKALDLVLGLITAQNVEKVVLYLK |
| Parental | KEVVKTQSGELEKGGEYRQMLVQAIHACAVEYPEVAGSVVHLLMDFLGDTNVAAAVDVVLFVREIIETNP |
| KEV..T.........EY..MLVQAIHACAV.YP.VAG.V.H.L.DFL.......A..V..FV...I...P | |
| Retrocopy | KEVFETMDSGHKMAYEYYLMLVQAIHACAVQYPSVAGLVMHILLDFLVYADIPSASGVIMFVCDVIGADP |
| Parental | KLCVSMIQRLSDTFYQIRASRVCSIALWILGEYSLSLSEVESAIATIKQCLGDLPFFTISEEGETTDSSK |
| .L.VS.I.RL.D....I..S..CS..LWILGEYS.SLSEV..AI.TI.Q.LGD.PF....E.....DSSK | |
| Retrocopy | LLRVSVIVRLVDLLSFIQDSFICSCVLWILGEYSFSLSEVRRAISTILQTLGDQPFNDVTEKSDEFDSSK |
| Parental | PAQLVVNSVTVSSRRPVVLADGTYATQSAAT-EAISTPSVTPGSLALTLNLRSLILSGDFFLAAVVACTL |
| .......S....S.R..VL...TYATQ...T.E.I.....T.G....T..LR.LI.SGDF...AVVACTL | |
| Retrocopy | TVNPLRGSCNLRSKRHIVLSNDTYATQTVVTGESIFDCAPTSGLFDCTHSLRFLIMSGDFH*GAVVACTL |
| Parental | TKLVLRLEEVQPS-KVEANKACTGALLVMTSILQLGLSSYLPQPIDNDSYDRIVLCVRLLCNTG-DDVRR |
| TKLVLRLEEV.PS.KVEANKA.....L.M.S..QLG.SSYLP.PID.DS.DRIV.CVRLLC.T..D..R. | |
| Retrocopy | TKLVLRLEEVEPSNKVEANKASAESFLIMVSMMQLGKSSYLPHPIDSDSHDRIVFCVRLLCSTDYDHARK |
| Parental | IWLQSCRQSFAKMLAEKQFRET-EEMRAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKAATG |
| .WL.SCRQSF.K.LAEKQ.R...E.M...AQ..HA.PDD.IDFYHL.SR.GM.QL..EDE..DDLKAATG | |
| Retrocopy | VWLLSCRQSFTKKLAEKQSRKNNEKMKVEAQNAHAHPDDSIDFYHLRSRRGMGQLDSEDEFRDDLKAATG |
| Parental | GFTKETDDANRLNRILQLTGFGDPVYAEAFVTVH-HYDIVLDVTIVNRTKETLQNLCLELATMGDLKLVD |
| ...K..DDAN.LNR..QLTG..DP.Y.E.FVTV...YD.VLD.T.VNRT.ET..NLCLE.AT........ | |
| Retrocopy | EL-KDADDANNLNRPIQLTGLSDPLYVEGFVTVNQYYDTVLDITFVNRTEETMHNLCLEFATACRNAVLE |
| Parental | RPQNYTLAPESSKQVRANIKVSSTETGVIFGNIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFR |
| R...YT.AP..S.Q..ANIKVSS...G.I...IVYETS.....S.V.L.D..I.I.DY..PATC.D..FR | |
| Retrocopy | RSPKYTVAPNASEQIQANIKVSSSNVGIILTRIVYETSDEVGPSEVILKDMNISIADYVTPATCTDIAFR |
| Parental | NMWAEFEWENKVAVNTVIQDEKKFLNHVIKSTNMKCLTPLSALDGECGYIAANLYAKSVFGEDALVNISI |
| .MW.E..W..KV.VNTV..DEK.F.N..IKSTNM.CLTP.SALDG.C...AANLYAKSVFGEDALVNISI | |
| Retrocopy | KMWTECPWKVKVKVNTVLHDEKAFVNFIIKSTNMNCLTPSSALDGDCWFVAANLYAKSVFGEDALVNISI |
| Parental | EKQVDGKLSGYIRIRSKTQGIALSLGDKITLKQK |
| EKQ...KLSGYI.IR...QG..L.L.....LKQ. | |
| Retrocopy | EKQSNSKLSGYIAIRGYVQGLVLNLTHTLILKQQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Triticum aestivum was not studied using RNA-Seq expression data.
Triticum aestivum was not studied using ChIP-Seq data.
Triticum aestivum was not studied using EST data.
Triticum aestivum was not studied using FANTOM5 data.
retro_taes_120 was not experimentally validated.
Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Triticum aestivum | TRAES3BF035100020CFD_g | 1 retrocopy |
retro_taes_120 ,
|