RetrogeneDB ID: retro_taes_130

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 4A:193969145..193969574(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_4AL_91A056793
• Aliases: None
• Description: None

Sequence

>retro_taes_130
GCGGTCATGCTGCCCGGCATGGTGGAACGGGGGAGAGGTGTCGTCGTCAACATCGGCGGCGCCATGGAGGCGTTGCCCTC
TTACCCGCTCTACTTCGTCTATGCTGCCACCAGGCCGCATGTTGCTCAGTTCTCCAGGAGCCTCTACGTCGAGTACAAGG
GCAGAGGGATCGATGTGCAGTGCGAGGCCCCGCTGTATGTGGGCACGAAGATGTTGACCAACATGGTGACGCGGGAAGGC
CTCCTGTCGTAGCTGATCATGCCGACATCAGACACCTACGCCGGCGCGGTGGCTCGCTGGATCGGGCACCGCCAACCGGT
CTGCATGCCCAACCTCGGCCACCGGCTGCAGTGGTGCCTCTGCCACTTTGTCCCGGATCGCGTCCTTGCCATGCACCGCC
TCCGCGAGAACCTTCGGCAGCAAGCCGTC

Alignment

ORF - retro_taes_130 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.92 %
• Parental protein coverage: 51.61 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AAVLPGMVERGRGAVINIGSGSTEALPSYPLYSVYAATKRYVAQFSRSICIEYRGKGIDVQCQAPLYVDT
          A..LPGMVERGRG.V.NIG.G..EALPSYPLY.VYAAT...VAQFSRS...EY.G.GIDVQC.APLYV.T
Retrocopy AVMLPGMVERGRGVVVNIG-GAMEALPSYPLYFVYAATRPHVAQFSRSLYVEYKGRGIDVQCEAPLYVGT

Parental  KMVTNMVNREGLFSWLTMPTSDAYANAATCWIGHRSPICMPNLSHRLQWCLIHFIPDRFIVAHRLRETLR
          KM.TNMV.REGL.S.L.MPTSD.YA.A...WIGHR.P.CMPNL.HRLQWCL.HF.PDR....HRLRE.LR
Retrocopy KMLTNMVTREGLLS*LIMPTSDTYAGAVARWIGHRQPVCMPNLGHRLQWCLCHFVPDRVLAMHRLRENLR

Parental  QRAV
          Q.AV
Retrocopy QQAV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_130 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_4AL_91A056793	1 retrocopy	retro_taes_130 ,