RetrogeneDB ID: | retro_taes_132 | ||
Retrocopy location | Organism: | Wheat (Triticum aestivum) | |
| Coordinates: | 4A:184572352..184572637(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | Traes_5AL_AAB4628BD | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_taes_132
GACTACTACGTGGACATGTTCGGTGACGACGCAGTCGATGTCCGTGCCGGCGCGAAAACGGCGGTCGATCCATCCGGTGG
ACATGCAGCTAACCCGGATCAGCCAACAGCGCAGCCTGATGGTTCCGGTGCGACGACGGAGGAGGAAGCCGGCGGCGTGG
CGGGCTGGGACTACGTGTACGATCCGGCGTCGGGATACTACTACAGCGGCAGCACGGGGCACTACTACGACGCCGCGTCC
GGGTGCTACTGGTCCGCGTCCACGGGCACATGGTTCTCCTACGAC
ORF - retro_taes_132 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 55.67 % |
| Parental protein coverage: | 66.19 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | DNNFDMFGENDDTDVNPDSDAKTLDSG---SNPE-PVPQ-DASGTSGAEKVGNGSADSDYVYDPSSGYYY |
| D...DMFG..D..DV..........SG....NP..P..Q.D.SG....E..G.G.A..DYVYDP.SGYYY | |
| Retrocopy | DYYVDMFGD-DAVDVRAGAKTAVDPSGGHAANPDQPTAQPDGSGATTEEEAG-GVAGWDYVYDPASGYYY |
| Parental | SSSTGYYYDAASGCYCAASTGTWYSYD |
| S.STG.YYDAASGCY..ASTGTW.SYD | |
| Retrocopy | SGSTGHYYDAASGCYWSASTGTWFSYD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Triticum aestivum was not studied using RNA-Seq expression data.
Triticum aestivum was not studied using ChIP-Seq data.
Triticum aestivum was not studied using EST data.
Triticum aestivum was not studied using FANTOM5 data.
retro_taes_132 was not experimentally validated.
Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Triticum aestivum | Traes_5AL_AAB4628BD | 1 retrocopy |
retro_taes_132 ,
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