RetrogeneDB ID: retro_taes_163

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 7D:57600346..57600835(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: TRAES3BF101300010CFD_g
• Aliases: None
• Description: None

Sequence

>retro_taes_163
ACCCCATTGCATCTTATTCTCCACACTTCCTTTCACCAACCTCTTCTCTCCAGAACAAACACGAGAGAGCAGAGGAGAGT
CATGGCGGATGCACCTCTTTACAAGTAGCGCCGCAGGTACACCAGGGAGCTCCACGACGTCGACTTCCACGGCAACCACA
AGCTCCACGTCGTTTGCACAAGCAAGGGTGAAGACGTGGACAAGATGCTGTCCACGCTCAGGAGGAAGCTCGGCGGAATG
CCCGTCAAACTAGTCGGCGTTGATGTCGAGTACACGCACTACATGAAGCCACAGCGGGCAGCAGTGCTCCAGCTATGCGT
AGAAAAAGAATGCCTTGTCTACCACATCTCTACAGCTAAAGACAGGTCAGAATAATTATCAATCTATACTATTGATTGTC
AATATTGATTTAAATTTTCTTCACTGCAATCGCCAATACTTAAACTTTGGTTTTCATTTTTGAAAAGCATGGCATATGAA
TTCATTGAC

Alignment

ORF - retro_taes_163 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.84 %
• Parental protein coverage: 72.05 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TKLHVI-HTNDKKQMAISLAQTNTIEQRRIMADARLYKQRRKYSRELHDIHLHGNHKLHVFCTSKGKDVD
          T.LH.I.HT.........L..TNT.EQRR.MADA.LYK.RR.Y.RELHD...HGNHKLHV.CTSKG.DVD
Retrocopy TPLHLILHTSFHQPL---LSRTNTREQRRVMADAPLYK*RRRYTRELHDVDFHGNHKLHVVCTSKGEDVD

Parental  KMLSTFRRKLDGMPVKLVGVNVEYTHYEKPQREAVLQLCAGKECLVYHISTSKDRPMELDKFLMNDEYTF
          KMLST.RRKL.GMPVKLVGV.VEYTHY.KPQR.AVLQLC..KECLVYHIST.KDR...L........Y.F
Retrocopy KMLSTLRRKLGGMPVKLVGVDVEYTHYMKPQRAAVLQLCVEKECLVYHISTAKDRSE*LSIYTIDCQY*F

Parental  VGFAIEGDKSKLKVSGLEINSDNYID
          ..........KL..S.L.......ID
Retrocopy KFSSLQSPILKLWFSFLKSMAYEFID

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_163 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	TRAES3BF101300010CFD_g	2 retrocopies	retro_taes_163 , retro_taes_164,