RetrogeneDB ID: retro_taes_165

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 7D:74920264..74921235(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_7DS_A07A7A4F0
• Aliases: None
• Description: None

Sequence

>retro_taes_165
GATAAAGCGGAGACGAAGAAGGCGGCGGCAGAGGAGAGCAACCCCATGGTAGTAGAGACGACAACGGCAACCCAAGATTT
ACATTGCCACTACTACATGCCAATCTTTCCGGGGAGCAGCCACCGTGATGGCGCGATCTACAAGAAGAGGCTCAGTGGGA
GAGCGATTACGGCGTCGACATCGCCGACCGCACGGAGACTCTGCTTGAGCCATCGTACGTGGACGACATGACATGCGACA
TGCTGCAGATTTTCTCGCTGAAGCTAGCCAAGTCTCCTGTCACTGCCAGCAATGGCTCGATAGAGCTATATGGATTCATG
GCGGCACGAGACGAGTACGATTTGAAGCTCAACTATGTTTTCAACCGCGGCAGAGAAGATCCCGTCGTCGTGCAAGAGGG
CTCGATCATCCAGATGACCGGCCCCAGGAGAGGCATTGCGTTTCACTGCGACGTTCTGCTTGAGTTCGACATGAGGATCA
GGAACGGAGAGAGAGAGGAAGACGACGCGCAGCTGATCGACGGAATGTCTGAAGTTCGAGGAATGTTCATGCCGTGGGAA
CCGACCCCGGTTCGCCTCGACGGTGACTGCGGCGCGGTCGAGGTGTCTTCCGCACTCGTTAGCAATGCAGTCGCGGCCAT
TGTAGAGGTTATCGTCGTATCAGAGGTGCGGACTGGTTTCGATTTATCCCTCAGCTCCGTCATTTGTGCTGTGGGGGCGC
ATGAGTTTCAGCTTTTTCATGGCTCTGTTGGCGACTGGTGGGGCGAAAGGAGGTTCGCGATTGCTGTCACGCTGGATACT
ATGATGCATCTGAAGTTCGTGGTTGGTCACAAAGGCTCTGGTGGTAATGTTAAACGCAGATGTTCCTTCAGAGCTAAGAT
AAATGGGCAGGTCAGGCGTCGAATAAAGGTTGAGCTCGCCTCTATCTCGGTGAAGGTGACTTGGGCGGCGTGGCCTCACC
ATATGTTTTGT

Alignment

ORF - retro_taes_165 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.38 %
• Parental protein coverage: 99.68 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DKAERMKAA-EESNPMV--ETSAIQDV---YYQPIIPGSSHRDGTIYKKRL-EWESEYCVDVDDRTETQL
          DKAE..KAA.EESNPMV...T.A.QD....YY.PI.PGSSHRDG.IYKKRL..WES.Y.VD..DRTET.L
Retrocopy DKAETKKAAAEESNPMVVETTTATQDLHCHYYMPIFPGSSHRDGAIYKKRL<QWESDYGVDIADRTETLL

Parental  EPASWDDMTCEMMQIFSLKLAKSPI--NSGSMQLYGYIAARDEYDLRLNYLFNRSREDPIVVQQGFLIQM
          EP...DDMTC.M.QIFSLKLAKSP.....GS..LYG..AARDEYDL.LNY.FNR.REDP.VVQ.G..IQM
Retrocopy EPSYVDDMTCDMLQIFSLKLAKSPVTASNGSIELYGFMAARDEYDLKLNYVFNRGREDPVVVQEGSIIQM

Parental  TGPKRGIAFHCDVLLEFGMRIKNGENEGDDTQLIDGMSEFRGLLMPWEPTEIPINGNCATVEMSAALVSN
          TGP.RGIAFHCDVLLEF.MRI.NGE.E.DD.QLIDGMSE.RG..MPWEPT.....G.C..VE.S.ALVSN
Retrocopy TGPRRGIAFHCDVLLEFDMRIRNGEREEDDAQLIDGMSEVRGMFMPWEPTPVRLDGDCGAVEVSSALVSN

Parental  AIAAIVEVI-ISEAHGDFDLSLSSIVSVVEEHEFQLFHGSAGDWCGVRRFVIAVTVNTMLHLKFMLGHRC
          A.AAIVEVI..SE....FDLSLSS....V..HEFQLFHGS.GDW.G.RRF.IAVT..TM.HLKF..GH..
Retrocopy AVAAIVEVIVVSEVRTGFDLSLSSVICAVGAHEFQLFHGSVGDWWGERRFAIAVTLDTMMHLKFVVGHKG

Parental  SNGNIEDTCSFKAKLNGHASHQTNLEAASILTKVTWAAWPPEMFC
          S.GN....CSF.AK.NG........E.ASI..KVTWAAWP..MFC
Retrocopy SGGNVKRRCSFRAKINGQVRRRIKVELASISVKVTWAAWPHHMFC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_165 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_7DS_A07A7A4F0	3 retrocopies	retro_taes_11, retro_taes_155, retro_taes_165 ,